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Hello,
I am trying to stitch a 694 GB .nd2 file of a cleared mouse brain acquired with a confocal. The tiles were generated as z-stacks before moving in the xy plane.
BigStitcher starts export and…
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Hello ijp-kheops team! I'm helping out a team close to me with slide digitization, I'm trying to incorporate this library into a script and workflow. I'm starting with a sequence of tiff images that h…
ohkio updated
1 month ago
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See https://forum.image.sc/t/bioformats-importer-in-fiji-resolves-http-urls-to-tiffs-when-importing-image-index-file-but-omero-importer-does-not/83530 .
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Hi @BioFormats,
Just a small enhancement request. Could you add GaAsP-PMT' to the DetectorType list? The relevent error is below.
WARN l.enums.handlers.DetectorTypeEnumHandler - Unknown Detec…
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When opening 16-bit tifs with a color map (exported from nd2 with bioformats) I get an `AssertionError`:
```
File "/opt/ilastik/ilastik-1.2.0rc10/ilastik-meta/lazyflow/lazyflow/operators/ioOperator…
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Hi,
I have a CZI that does open correctly with BioFormats 6.1.1. I did the following
- open compressed CZI in Fiji
- open uncompressed CZI in Fiji
- export CZI as OME-TIFF from ZEN and open in…
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Reported at https://github.com/IDR/idr-metadata/issues/696#issuecomment-2191691918
ResourceErrors from idr0043, affecting Datasets from e.g 9101 -> 14734:
E.g. viewing http://localhost:1080/webclient…
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See https://forum.image.sc/t/bad-reading-of-lif-metadata/73038 .
There is already a similar issue https://github.com/ome/bioformats/issues/3513 . Wasn't sure if it should there or a new issue. Just d…
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In looking briefly at https://github.com/glencoesoftware/raw2ometiff/issues/104 and https://github.com/ome/bioformats/issues/3983, in both cases repeated calls to `NIOFileHandle.setLength` cause a sig…
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New board from BH support acquiring images in FIFO mode. But these dataset don't open in SLIM Plugin. Though there is a way to do that via SPCM which can export images in non-FIFO mode, it will be a n…