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Datasources in myvariant.io may contain large files to download (e.g. `dbsnp` release 155 has 380GB). Due to various reasons (like FTP connection issues), the download may be incomplete, leading error…
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Tentatively labeling this a bug, but it may be an inherent limitation.
This query
```
{
"message": {
"query_graph": {
"edges": {
"e01": {
…
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### The motivation
(This is a specific problem that involves large-scale x-bte refactoring. Let's discuss the "large issues" of x-bte refactoring one at a time.)
When writing x-bte operations, t…
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This issue is to track how BTE can be used to answer the breast cancer drug repurposing use case developed by the clinical WG. An overview presentation of the use case (including results from Winter …
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[EDIT: this was the original motivation. The next post explains addressing this and more using a new API-level x-bte field]
This is a less-important + probably-easy part of "x-bte refactoring". Pre…
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API URL: https://biothings.ncats.io/text_mining_targeted_association
Parser GitHub URL: https://github.com/UCDenver-ccp/text_mining_targeted_association
Git branch/commit: Master 1f0d0ae
No. Docume…
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[UPDATED]
We'll update to [biolink-model 4.1.6](https://github.com/biolink/biolink-model/releases):
* it has inverses for all new predicates (4.1.4)
* has some SEMMEDDB mappings we use when gener…
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In https://github.com/biothings/BioThings_Explorer_TRAPI/issues/569, we created the semmeddb2 API that aggregates records by unique subject-predicate-object triples, and computes `pmid_count` and `pre…
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(Copied from [internal Slack thread](https://suwulab.slack.com/archives/CC218TEKC/p1678141422868179))
This isn't urgent.
I'm not sure why uptime-checking is failing for some endpoints ([SmartAP…
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Translator APIs in SmartAPI registry provide meta-knowledgegraph (or metakg) information. These APIs can be [TRAPI](https://github.com/NCATSTranslator/ReasonerAPI) APIs or those APIs annotated by `x-b…