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Hi! I just installed TED, but I couldn't find function, _norm.to.one_.
```
> install_github("Danko-Lab/TED/TED")
Downloading GitHub repo Danko-Lab/TED@HEAD
Error in utils::download.file(url, path,…
Ci-TJ updated
2 years ago
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https://mp.weixin.qq.com/s/ZCOoeQU6ysK9G8apTnfjvQ
ixxmu updated
2 years ago
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Thank you for developing and making this powerful tool available.
I tried to follow your toy example of bulk RNA-seq deconvolution using ENIGMA. However, I cannot find the example RDS data files (b…
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I am interested in knowing if PBMCs infiltrate into the brain. I want to deconvolute bulk RNA seq data of human brain using single cell data of human PBMCs. Does it make sense to do this?
One more i…
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https://mp.weixin.qq.com/s/ugL-mehYWkXU_msxY_-V_g
ixxmu updated
2 years ago
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Hi all,
here's information about the deconvolution methods we would like to integrate:
- [x] [Bisque](https://github.com/cozygene/bisque)
- [x] [CIBERSORTx](https://cibersortx.stanford.edu/)
-…
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Hi guys,
Kudos for developing this package. I'm really interested to test it on our data. I've had a couple of gos and I'm experiencing some issues though.
I'm looking to determine the cell fract…
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Hello,
I am trying deconvolution of bulk RNA-seq data based on brain structure expression patterns on my organoids. It works great when I use structures from custom_2, but when I run it on custom_1…
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@FFinotello @grst The CPM method requieres an argument called "cellSpace" (https://cran.r-project.org/web/packages/scBio/scBio.pdf). Do we have a single cell dataset with such information?
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Hi Kevin,
I come across your paper and find it really useful to deal with the bulk RNAseq data, which is exactly what I need. I wonder if you could release the processed real bulk data listed in Tabl…
yfzon updated
3 years ago