KevinMenden scaden issues

KevinMenden / scaden

Deep Learning based cell composition analysis with Scaden.

https://scaden.readthedocs.io

MIT License

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issues

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Update scaden to work with Keras API

#127 alex-d13 opened 1 month ago
0
AttributeError: 'numpy.ndarray' object has no attribute 'todense' with H5AD file as input for 'scaden simulate'

#126 WanderingHedgie opened 2 months ago
0
Scaden paper test data

#125 jth3galv opened 8 months ago
1
Scaden simulate ValueError and choosing input parameters

#124 elise-smith opened 1 year ago
0
Illegal instruction on MacOS M1

#123 annasoli opened 1 year ago
1
IndexError: arrays used as indices must be of integer (or boolean) type

#122 Wangyananblink opened 1 year ago
2
Scaden simulate, data input

#121 gemmabb closed 2 years ago
3
some questions about ascites

#120 Vnicy closed 2 years ago
0
some questions about ascites

#119 Vnicy closed 2 years ago
1
ValueError: Input contains infinity or a value too large for dtype('float32').

#118 chenjy327 opened 2 years ago
3
Scaden web interface sign-in is down

#117 yunners closed 1 year ago
2
Scaden process issue

#116 ThomasThaewel opened 2 years ago
1
About Scaden test

#115 solitudetuzi closed 1 year ago
1
Merge mouse whole cell + infiltrating immune cell in cancer

#114 mHagiw closed 2 years ago
4
ValueError: Input contains infinity or a value too large for dtype('float32').

#113 mHagiw closed 2 years ago
3
ovarian cancer ascites sample

#112 HelloYiHan closed 1 year ago
1
Preparing Count-matrix

#111 bio-visualisation opened 2 years ago
0
Scaden example command not found

#110 bio-visualisation closed 2 years ago
3
Scaden simulate ValueError: low >= high

#109 mHagiw closed 2 years ago
3
Error when using adata object

#108 ThomasThaewel opened 2 years ago
3
issues with conda version of scaden

#107 me37uday closed 2 years ago
3
Is it wrong to deconvolute bulk RNA seq data of a tissue using scRNAseq data of a different tissue?

#105 Tushar-87 closed 2 years ago
3
The simulated training dataset for the Human Brain.

#104 hathawayxxh closed 2 years ago
7
Using a prediction file with fewer genes than that in training data results in error

#103 nagendraKU closed 2 years ago
1
execuse,I encounter some data issues

#102 solitudetuzi closed 1 year ago
1
Timing scaden train on cpu vs gpu

#101 nagendraKU closed 3 years ago
2
Simulate errors out when celltype names are only numbers, requires text prefix to run correctly.

#100 nagendraKU opened 3 years ago
1
PR for bugfix release 1.1.2

#99 KevinMenden closed 3 years ago
0
scaden train can't find key 'cell_types'

#98 sydneysue closed 3 years ago
8
scaden process not running

#97 sydneysue closed 3 years ago
1
singularity image or environment.yml

#96 nfancy closed 2 years ago
2
Pattern matching unintuitive

#95 khkk378 opened 3 years ago
2
Bug fix release v1.1.1

#94 KevinMenden closed 3 years ago
0
Scale model?

#92 khkk378 closed 3 years ago
1
Experiments on real bulk data

#91 hathawayxxh closed 2 years ago
25
Simulate slow

#90 khkk378 opened 3 years ago
2
Simulate distribution

#89 khkk378 closed 1 year ago
1
M256 drop out rates in M1024

#88 khkk378 closed 1 year ago
2
Pattern not matching in scaden simulate

#87 khkk378 closed 1 year ago
4
Bump conda

#86 khkk378 closed 1 year ago
2
Scaden example sometimes breaks

#85 KevinMenden opened 3 years ago
2
Release v1.1.0 PR

#84 KevinMenden closed 3 years ago
0
Curious about generating samples and labels from existing data

#83 pallavisurana1 closed 3 years ago
3
Enable multiprocessing for data simulation

#82 KevinMenden opened 3 years ago
1
ADD h5ad input format option

#81 eboileau closed 3 years ago
1
Can you release the processed real bulk data for model validation?

#80 yfzon closed 3 years ago
3
PR for Scaden v1.0.2

#79 KevinMenden closed 3 years ago
0
Notify user if specified datasets are not part of the training data

#78 KevinMenden closed 3 years ago
1
How to repeat the experiments in your paper

#77 hathawayxxh closed 3 years ago
19
Order of genes in prediction data

#76 amjass12 closed 3 years ago
2