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Hello,
To create my cellbrowser I was trying to use desc.conf as mentionned in the readthedoc
Is it still a thing ?
Does not seem to be taken into consideration.
Thanks
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Hi,
I have successfully build and run "Mini" and its working fine.
Now i download Autism Data place it in a folder. but when i try to run cbbuild on "Autism" it gives me following error. Please h…
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```
import numpy as np
import pygimli as pg
from pygimli.mplviewer import CellBrowser, drawModel
axs = pg.plt.subplots(1, 2)[1]
x = np.linspace(0,10,11)
m1 = pg.createGrid(x, x)
pg.show(m1,…
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Hi there,
I added to the following lines to my ```desc.conf``` file:
biorxiv="link"
ega="XXX"
and I cannot see any link appearing in the description of the dataset (but title, abstract and m…
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Dear,
Thanks for the tool. I was wondering, if it would be possible for me to deposit the output of cbBuild on a shared folder (on university server storage which is accessible by everyone at the l…
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Hi,
I've been visualizing quite large datasets (>100k cells) with cellbrowser (from scanpy .h5ad files) and building cellbrowser for these large data takes a significant amount of time. In particu…
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Hey, Max.
So, it looks like something weird is going on with color by gene expression when the gene expression includes negative values. Basically the zero gets put below the negative numbers and a…
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So, I'm trying to import an `rds` file. First errors suggested I needed to update my Seurat version. Which I did using conda. The new error seems to suggest that there's some issue with my R version?
…
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Hi there,
This may be known and fine, I'm using the develop branch (so I can get that nice set-background feature),
and cbBuild is not including the js files, css, img, and etc. The resulting htm…
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The logic in this function will converts pretty much all datasets to lowercase so if one creates a dataset w/ uppercase name it throws an error saying that it cannot find the dataset when passing a UR…