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When doing estimate_contrasts with transform = "response" for a logistic model the estimates are not in terms of probabilities like the help page said:
"Thus for a logistic model, "none" will give …
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#### Current behavior:
31 genes are discovered to be uncorrelated with their corresponding reactions in `Inositol phosphate metabolism`.
| Gene | UniProtID | Reaction | GPR| Correlation| M…
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The MediKanren team has done a great job collecting use cases at https://github.com/webyrd/mediKanren/tree/master/biolink/use-cases (currently two). That folder contains both the racket code and a PD…
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### Softwares
SPM
### Input data
derivatives (fMRIprep)
### Additional context
Pipeline reproduction is almost done, only one issue remains.
For the hypotheses 5 and 7, correlations values bet…
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Hi!
Thanks a lot for the great tool! We already got some interesting results, but now are running into issues using more complex design and contrast matrices.
I tried following your vignette in …
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Hello I'm trying to do an DE analysis. I was using this script from Trinity called run_DE_analysis.pl, I have everything but when I run the script i have this
Got 3 samples, and got: 4 data fields.
…
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This is strange, because sometimes the value also comes back `None`. Unset values should be indicated consistently, either as `None` or with the field absent.
Here's some samples. Other fields may be…
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This was a very well done workshop! Found it super helpful in understanding heteroscedasticity.
I have to ask though if/when you are planning on doing more of these?
Thank you,
Alex
PS: Here is the …
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Hi team,
When using BUSTED-PH/contrast-fel to detect directional selection pressure, I found the overall dn/ds values are significantly differed in foreground and background genes. However, the res…
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The Problem
========
As seen in this shot
![image](https://github.com/jesterKing/literate/assets/2514994/c9d949fc-cfdd-470d-86f9-2b9c0d7b6b6c)
it is almost impossible to read the code (on the le…