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Dear,
Greetings
The new version of RepeatMasker Causes a lot of trouble for me.
When I installed the new format library from Dfam.h5 and repbase, then run configure a lot of warning occurs:
``…
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**Describe the bug**
Sources do not seem to get history handled correctly if they are processed within the same night/batch.
Possible solutions:
- disaggregate sources i.e remove the duplicates e…
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When we are on cloud (e.g., Fornax)
1. Benchmarking the speed in comparison to local cluster
2. Benchmark scaling, i.e,. speed as number of workers, in comparison to local cluster
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**What's going on**
I am trying to install the SCPA PACKAGE ( R version 4.3.3) without success,It seems the problem is "multicross" package, which is a dependency.
**Code to replicate the issue**…
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Check astroquery Vizier speeds vs cdsclient command line interface (what SCAMP uses). I've looked at the cdsclient scripts and plan to run this on similar fields to compare the results.
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Viz https://dciikem.slack.com/archives/C05F3FQQEBS/p1722949048725479
- [x] V prvni fazi zkusit zreprodukovat, pochopit o co jde. a pak si s @kubantjan zavolat
- [x] Fixnout bug, ze kdyz je antibod…
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I have asked MAST helpdesk for help with how to run this search efficiently at scale
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Unfortunately I can not install SCPA because it has hard dependency on two packages that have been removed from CRAN on failure to correct reported errors:
https://cran.r-project.org/web/packages/…
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To help simplify our versioning / provenance model we should combine all the steps after producing a preprocessed image and before subtraction into a single step.
This includes:
- Source extraction
-…
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Hi,
ProcessRepeats crashed on our computing cluster due to 'out-of-memory'. So now I'm running ProcessRepeats separately on the final cat file (3.9 Gb). However, there is no indication of progress or…
gevro updated
1 month ago