-
### Description of feature
https://github.com/nf-core/viralintegration/blob/summaryreport/tests/modules/summary_report/main.nf.test
https://github.com/nf-core/test-datasets/tree/viralintegration/t…
-
Hi Brian,
Thank you for making STAR-fusion available, it's a great tool! I've been running it on some samples and have a few questions:
- Am I using the right plug-and-play set of files for my v…
-
Hi,
I have encountered problems running ViFi on EBV genome with `--disable_hmms`. The possible bug leads to 0 clusters in `output.clusters.txt` and `output.clusters.txt.range` for several samples c…
-
Hello,
I've been trying to use STAR-Fusion for some RNA-seq data. No error was thrown but it didn't detect any fusions.
The command worked fine with testing data in STAR-Fusion-v1.10.0.FULL.tar, g…
-
Hello.
I used STAR-Fusion to know the fusion coding sequencing of the fusion gene.
Starfusion version is 2.10.0v and STAR version is 2.7.8a.
To know Fusion CDS, I ran Star Fusion with the --…
-
Hi, Are there instructions on how to properly configure all the reference files so that the ctat mutations pipeline will run on Terra with FASTQ inputs? Thank you.
-
Hi! I am testing the pipeline on the testing set using the singularity image ctat_mutations.v3.0.1.simg. When I ran the comman I got the following error at the end of the pipeline:
```
[2021-05-25 …
-
Hi! I have used the star fusion. But have used it after star aligner. For star alignment we have used ensembl version of human genome Hg38. And for star fusion the ctat genome library files was downlo…
-
Hi,
I installed CTAT-Mutations via Docker. Everything went well until running this command:
$ oc module install-base
Here is the error message:
![image](https://user-images.githubusercontent.c…
-
Hi,
I tried to run CTAT-mutations using singularity. My command is:
`/path1/singularity exec --bind /path2/ctat_genome_lib_build_dir,/path4/ /path3/ctat_mutations.v3.2.0.simg /usr/local/src/ctat…