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Hello community,
I am trying to run a pycytominer tutorial and this tutorial also utilizes the cytotable package. But on running the following code block I am getting an error.
Python Code block…
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I made a proof of principle one [here](https://github.com/cytomining/pycytominer-Docker) for my own purposes, but if you want, it would be < an hour or two of work to set this up as a GH action inside…
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### What happens?
We noticed via https://github.com/cytomining/CytoTable/issues/163 that DuckDB 0.10.0 appears to change the treatment of duplicate column identifiers through JOIN operations with Arr…
d33bs updated
8 months ago
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This issue was discovered in collaboration with @MattsonCam.
# Problem
When using CytoTable on SQLite files that were generated from cytomining and not CellProfiler, we had assumed we should use…
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The cell locations file that is supposed to exist by url
```
s3://cellpainting-gallery/cpg0016-jump/source_5/workspace/load_data_csv/JUMPCPE-20210730-Run14_20210731_000211/ATSJUM206/load_data_with_…
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`run_pipeline` throws an exception when there are not valid pairs for a sample and such sample is not used in neg_pairs either.
https://github.com/cytomining/copairs/blob/11570eb5e03d908e344bb8f7f…
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`CytoTable`'s `convert()` function seems to capture `nan`'s as string types within the cell-helath dataset causing `duckdb` to raise `duckdb.TypeMismatchException` error.
Below is the code to repl…
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# Problem
I have tried many different variations of convert to avoid this issue. I will provide one example in this issue.
To explain, I have a SQLite file acquired directly from CellProfiler bu…
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after running aggregate, the `average_precision` column is still called the same. It shoud become `mean_average_precision`
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I am fitting UMAPs but cannot because there are missing values in the data frame. Please add `drop_na_columns` with an `na_cutoff=0` in [3.process-cfret-features](https://github.com/WayScience/CFReT_d…