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Hi! Thanks for your great tool!
Just to double check: Does MiloR take into account that we can be giving two conditions with different sample size. For example condition A has 1000 cells and conditio…
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**- Upload your log file**
(If a log file hasn't been generated, go to the 'Run' tab in FragPipe, click 'Export Log', zip the resulting "log_[date_time].txt" file to avoid truncation, then attach the…
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Hello @brianjohnhaas
I'm doing DEG recently. Refer to the reference steps, I found that there seems to be some problems with the R installation application package in linux (as shown below).
![I…
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Hello everyone,
I downloaded 5 TCGA-BRCA samples (by choosing specific criteria - I got five tumor samples and their five normal samples) and I run `CIRIquant` on them. I performed differential exp…
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### Operating System
macOS
### Other Linux
_No response_
### Workflow Version
v23.04.3
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No response_
### EPI2ME Ver…
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Hi @sqjin
Amazing tool and suite of ways to visualize data! Thank you.
You have some great vignettes on how to differentially compare the same cell type from two different datasets, but I was w…
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Is it possible to perform differential expression analysis for each patient and to get the output logFC for each patient
Thanks.
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Hello Mr. Kai Fu
How i can give all 32 bit differential to program and get your result for impossible differential? how i can give special differential and get the result for differential analysis?
…
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**Describe the bug**
sur un dataset à 11 conditions il y a plusieurs bug
quand on arrive à Differential Analysis (après une quanti one versus one) --> subscript out of bounds
![image](https://gith…
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Hi yang,
Here are two quick question: 1) if we want to merge multiple sample of AS single cell data, what strategy do you recommend to use to remove batch effect? 2) the RNA velocity analysis …