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Read this paper: https://arxiv.org/abs/2402.06079
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Hi,
thank you for providing such a fantastic tool! It’s exactly what I needed for integrating GWAS summary data with scRNA-seq data.
While using this tool, I encountered a question regarding th…
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### Please link to the GitHub Discussion for this proposed analysis.
https://github.com/AlexsLemonade/OpenScPCA-analysis/discussions/635#discussioncomment-10140478
### Describe the goals of this ana…
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1. 1st figure: will be the general workflow for the whole analysis.
2. 2nd figure: the main figure
A new panel in figure 2 could be a Venn diagram that counts how many genes including outliers…
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I wanted to create a gtf file having columns
chromosome No., Start, end, gene ID, Strand
and using the GTF file as input for differential expression gene analysis using DESeq2 software.
How s…
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Perhaps wishfull thinking, but when I searched on A. baumannii 34654, the public genome that I mapped private RNA seq data to, and then imported the differential expression results using the DIff Exp …
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Hi
I am using monocle for differential gene expression analysis of single cells. I am trying to compare the expression of genes of a cell subpopulation (a cluster in tSNE plot for example) for two di…
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Hello,
I've been using the differential transcript expression analysis well, until recently I've been trying with a different dataset and I keep getting an error "names" attribute[2] must be the s…
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Hi, @WPZgithub
I have a question on lineage information input in the command line usage of CEFCON. As I'm not familiar with the python, I prefer to use the command line tools for CEFCON. But if I in…
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Hi again,
I have couple of questions related to your gene_relevance function.
1) I am not able to find in your vignette how to create a local gene relevance map for a single gene. Could you ple…