theislab destiny issues

theislab / destiny

R package for single cell and other data analysis using diffusion maps

https://theislab.github.io/destiny/

GNU General Public License v3.0

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issues

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density::DiffusionMap,Error: (converted from warning) 'as(<dsCMatrix>, "dsTMatrix")'

#67 younng367 opened 3 weeks ago
0
Fix API docs

#66 flying-sheep opened 4 months ago
0
Fix sparse matrix cast and ggplot aes_string deprecations

#65 flying-sheep closed 6 months ago
0
Is it reasonable to use DiffusionMap with n_pcs = NA?

#64 sam-israel opened 7 months ago
1
Segmentation fault with `DiffusionMap`

#63 lucygarner opened 1 year ago
4
Fix versions used in workflow

#62 flying-sheep closed 1 year ago
0
Version issue Matrix package (v1.5-1)

#61 basielcole opened 1 year ago
2
DiffusionMap: Error in duplicated.default(data) : duplicated() applies only to vectors

#60 MerRome opened 2 years ago
0
bioconductor tasks remaining

#59 vjcitn closed 2 years ago
1
can destiny use by provid a distance matrix?

#58 Mpaperlee closed 2 years ago
1
Switch to Rmd :(

#57 flying-sheep closed 2 years ago
1
Matrix rows deleted when creating DiffusionMap

#56 emma-sumner closed 2 years ago
5
Fix CI

#55 flying-sheep closed 2 years ago
0
Switch to GH workflows

#54 flying-sheep closed 2 years ago
0
Mapping new individuals on an existing trajectory

#53 mayanbriller opened 2 years ago
0
Disabled branching?

#52 mayanbriller opened 2 years ago
1
Please make sure BioConductior web page of destiny provides link to source tarball

#51 tillea closed 2 years ago
2
How to decide these tips? Find the cells along a certain path?

#50 chengkeren opened 2 years ago
0
package ‘destiny’ is not available for Bioconductor version '3.13'

#49 madalenamrp closed 2 years ago
12
Build error on Mac and Linux

#48 SamGG closed 2 years ago
2
Non-existent duplicate rows removed from data

#47 SBassler closed 3 years ago
1
gene_relevance questions 2

#46 cesarsierran opened 3 years ago
2
Just Gaussian kernel, no knn

#45 balthasar0810 opened 3 years ago
0
Bioc install failure on Mac OSX Catalina

#44 MikeDMorgan opened 3 years ago
5
Destiny build / Bioconductor Devel?

#43 bbimber opened 3 years ago
1
applying destiny DiffusionMap() to bulk RNA sequencing data

#42 taylorreiter opened 3 years ago
0
Unable to install destiny

#41 PeggySze opened 3 years ago
0
color code doesn't work for 3d diffusion map

#40 liuweihanty opened 3 years ago
1
Question: Can DC1 be well correlated to PC1?

#39 katsikora opened 3 years ago
0
cannot install destiny

#38 liuweihanty closed 3 years ago
1
Some cluster labels are missing after plotting the diffusion map

#37 aditisk closed 3 years ago
3
Plotting different conditions on the same diffusion components

#36 Kensei-K closed 3 years ago
2
Issues with trying to download destiny.

#35 Kensei-K closed 3 years ago
3
Use plainnat, as humannat seems to be gone from beebe

#34 flying-sheep closed 3 years ago
0
Different result of Calling DiffusionMap

#33 RuixiangLiu01 closed 3 years ago
3
Diffusion maps compared with scanpy

#32 zhengyuadalia opened 4 years ago
2
gene_relevance questions

#31 cesarsierran closed 3 years ago
3
DPT() ignores tips=...

#30 MikeDMorgan closed 4 years ago
5
Error creating DiffusionMap

#29 swokybio closed 1 year ago
3
Different results each time- set seed?

#28 krc3004 closed 4 years ago
1
Fatal error when calling DiffusionMap

#27 tiagobrc closed 4 years ago
1
Add LICENSE file

#26 flying-sheep closed 4 years ago
0
Is density normalization applied to the kernel?

#25 davisidarta opened 4 years ago
5
Changed behavior in git vs v2.12

#24 flying-sheep opened 4 years ago
2
Heatmap of genes along DPT pseudotime

#23 tkapello opened 5 years ago
1
Use HNSWlib

#22 flying-sheep closed 4 years ago
0
negative length vectors are not allowed

#21 igordot closed 4 years ago
7
Heatmap of genes along pseudotime

#20 tkapello closed 5 years ago
1
why are eigenvalues in decreasing order?

#19 taylorreiter opened 5 years ago
1
Use better ANN library

#18 flying-sheep opened 5 years ago
5