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Hello, I am using edmr right after MethylKit but the DMRs I get, correspond to a region where there are more CpGs than displayed in "num.CpGs" column. The code I run is the following:
```
dmp_rrbs…
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The following table references chapters from [The Bioconductor 2018 Workshop Compilation](https://bioconductor.github.io/BiocWorkshops/).
You can see the workshop schedule that I developed [on the …
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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat Enterprise Linux release 8.6
### Workflow Version
v.1.2.1
### Workflow Execution
Command line (Cluster)
### Othe…
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I have just started exploring use of DMRcate for DMR detection but have concerns about the approaches dmrcate offers for ranking DMRs. DMRcate offers Fisher's combination, Stouffer's combination, and …
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New issue so we can keep a track of running of scripts.
I'm currently test-running the annotation pipeline on the cluster, without PhaseMatch2. I've edited the size classes based on the density plo…
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Provide trainings with details about the algorithms of the main analysis to help user really understand what is happening .
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Hi,
I have RRBS data from 44 Lung cancer samples (Ctrl and diseases). There is high heterogeneity beside the tumor cells in the samples, that is why after pre-processing with RnBeads, I submitted the…
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Hi,
I want to use defiant to identify DMR in my WGBS data (non-model organism). I used the following command but can not identify any DMR. Please let me know if and how I could relax the conditions …
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非常感谢作者开发出exomePeak2这么好用的包。我在使用过程中发现，一旦在计算三次重复的的输入值时，会出现奇怪的结果，比如
基本所有peak的padj值都为0.998， score值都等于0.000180458。 但是三次重复分开三次运行时，结果却是正常的。下面是我的运行代码，我现在很困惑，希望作者能够帮忙答疑解惑，非常感谢🙏🙏🙏
f1="CK1_IP_.sorted.bam"
f2=…
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Hello,
Because of the improvements in modified basecalling accuracy `Nanopolish` states that it does not support R10 flowcells on its GitHub. It also seems that Oxford Nanopore is investing in this…