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Here be the info:
## Preferred term label
Pseudo-bulk aggregation of single-cell ATAC-seq data
## Synonyms
pseudo-bulk ATAC-seq
## Textual definition
This involves combining (binary …
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Due 02/09
All NMDC slots for JGI metadata should have the exact JGI metadata field mapped using alias or 'exact mapping'
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Hello, I want to express my sincere gratitude for providing this software. Currently, I'm facing an issue while using bam_cov.py to convert BAM files to BigWig. It seems that using only the default pa…
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Hi,
I found the output drop column name of "CADD-SV raw score", resulting in the incorrect header for columns after phred-score.
For example:
chr | start | end | …
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Hi there,
First let me say thank you for an awesome tool! Our lab is very excited to see how we can use it.
My question may be a bit complex, and I'm unsure if this is the best place and people …
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Hi,
I am going through the vignette on Analyzing PBMC scATAC-seq. I run the following line and get this error:
> pbmc head(Annotation(pbmc))
GRanges object with 6 ranges and 5 metadata columns…
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Dear developers,
This message comes from a very confused graduate student. Briefly, I'm trying to adopt the bpnet framework to my ATAC and Dnase-seq data (to avoid eyeballing motif scan results). H…
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This task was suggested by @turbomam, who said all the hyperlinks are defined in Markdown files in the `docs` directory.
I plan to use https://github.com/lycheeverse/lychee to check the hyperlinks.…
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I've been trying to train the resnet.py model to predict accessibility from DNA sequence (on the provided DNAse-seq data). I've ran into some issues (listed below). Is it possible for you to provide t…
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When running on Macbook Pro M1 I have run into an issue running rgt-hint.
I get the following -
`OSError: dlopen(/Users/ivancorea/rgtdata/lib/librgt_mac.so, 0x0006): tried: '/Users/ivancorea/rgt…