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Might be easier to use a file for some inputs instead of arguments
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I have successfully compiled HydroChrono. However, I am a bit confused about the input format of its H5 file. I am not sure how to structure this file in the right format, which is preventing me from …
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My code:
```r
bamba_ret = bambu(
reads = bam_file,
annotations = gtf_file,
genome = fna_file,
quant = FALSE
)
```
The error:
```
Error in value[[3L]](cond): Input g…
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(was: Solve dev(/test) dependencies and bloated, diverging lock files, by reconsidering the flattened lock file)
**Is your feature request related to a problem? Please describe.**
We've previous…
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Hello, I was running into an issue where I could not run the predict_race() function. What triggered the error was the line of code "colMeans(df[, grep("c_", names(df), value = TRUE)], na.rm = TRUE)" …
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dears
there are some issues about the enrichm.
When I use enrichm to process my MAGs, it always reports the following error.
![image](https://github.com/user-attachments/assets/12392aef-7138-4433-…
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To be consistent with 3DThesis and AdditiveFOAM, updating material properties in ExaCA from a Mist file would be valuable. I think there are a couple of questions about what is a "material property" v…
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Hi, first of all thank you for maintaining this project. Its awesome.
I just encountered an issue where I will merge two pdfs, then delete the files after wards. However I'm unable to delete the fi…
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Rollup-boost could read the inputs from a config file. Then, we could use this config file to do updates at runtime.
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As the title says, it would be interesting and very useful if the program had support for input from a directory (accepting subdirectories or not) for batch file processing. And the output directory s…