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Ref ga4gh endpoint here
https://github.com/samtools/hts-specs/pull/530
Rejects the bogus refname provided that we use currently
Have to adjust to not specify any refname, but then it returns …
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We should collect weird VCFs and ensure we parse them correctly.
It would be nice if this zoo had metadata about what's interesting about a file.
@jeromekelleher can you point to your GA4GH zoo …
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It looks like this is [specified here](https://github.com/ga4gh/data-repository-service-schemas/blob/7b8e94d01b72f4fbaa96fdddfb14c8e71420ce50/openapi/data_repository_service.swagger.yaml#L320) in the …
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Until we decide on a home for this code (see #234), it'd be helpful to get it working for DRS v0.1. We can then use these implementations to build/update code for conformance testing.
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## Task 1:
- Validate that similar queries work with OHSU implementation
```
Supporting query by id string only:
curl 'http://193.62.52.232:8082/ga4gh/genotypephenotype/search' -H 'Content- …
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Related to the issue I filed about the docs for building one's own 1kg server, has the project considered making the metadata about data sets available via hyperlinked views or other means? Since only…
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It will be cool if we can specify the list of endpoints that support GA4GH API
Right now using #cassiedoll 's benchmark I can find only google API working
From the endpoint list we have:
```
EBI - …
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I'm working with the add-variantset to see whether remote VCF will work yet, or not.
Here is the repo manager call
`python repo_dev.py add-variantset ga4gh-example-data/repo.db test "http://s3.amazo…
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Hi together!
The GA4GH standard for a WES server assumes accessible stdout and stderr logs at the rest API. Currently, the fields are provided but empty. I know that the nextflow weblog is not capabi…
bnwlf updated
4 years ago
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The current implementation of the `API` responses lacks adequate support for comprehensive pagination. The API solely offers a `next_page_token` as a cursor to navigate to the next page. However, to a…