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Monarch graph has ingested HPOA (OMIM, Orphanet, MorbidMap, etc.) mappings but these have some subtle issues of precision and completeness, and appear generated from secondary data sources that have c…
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some challenges with taking spheric, feature-based, linear clustering: (i.e. what is sacrificed from BiG-SCAPE or all-to-all pairwise comparison approach?)
1. Shorter BGCs and/or lack of features o…
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Hi! I was wondering if it is possible to incorporate environmental metadata into an analysis with spieceasi - it seems this would be quite important for getting an accurate network when dealing with d…
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[A8_results_out.log](https://github.com/mrmckain/Fast-Plast/files/5752719/A8_results_out.log)
[A8_Fast-Plast_Progress.log](https://github.com/mrmckain/Fast-Plast/files/5752720/A8_Fast-Plast_Progres…
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Hi,
Thank you for an excellent approach to functional metagenomics. I have a major concern with the normalization method based on relative abundance. It has been demonstrated that is one of the wor…
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I would like to propose three new AO terms:
AO-NEW-1: otolithic membrane
DEF: acellular matrix located between an otolith and its corresponding sensory macula. Otoliths form over sensory maculae …
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Hi,
I experience the following error: I have 16 gb ram, around 200K transcripts aligning on 24 chromosomes. May i please know, if it is the issue of memory. Thanks.
I am using pintron version: 1.3.3…
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Our simulation currently terminates only if it runs into an error, or if it has completed a designated number of simulations. Some of these errors are caused by bugs, but some of them reflect that the…
ggsun updated
5 years ago
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Hi,
I have two questions regarding the exon bed file. Would appreciate your time and help in this.
1. Should I provide non-overlapping disjoint exons for a gene OR all the exons from gencode gtf f…
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Reply with learning objectives (and challenges to test them, if possible).