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Similar to, and next to, but separate from ortholog section.
Requires https://github.com/pombase/pombase-chado/issues/31
mah11 updated
3 months ago
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This issue inspired me to see how paralogs are displayed at the moment:
- https://github.com/pombase/pombase-chado/issues/31
It's not good.
There are duplicates and no Descriptions:
https:/…
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Hi, thank you for this great tool. My rnaQUAST job appears to be hanging with no progress for >36 hours. Nothing has been written to the rnaQUAST database (`Saccharomyces_cerevisiae.R64-1-1.108.db`)…
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Hi all again,
cc: @ThomasDesvignes @mhalushka @mlhack @keilbeck @BastianFromm @ivlachos @TJU-CMC
Finally discussing naming proposals. Feel free to adapt the issue to ask more questions or clarif…
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Hi,
I'm using the ksrates docker image. I have an issue with not getting relevant output files. Here are the codes I have run,
```
/usr/local/bin/ksrates init config_oxalis.txt
/usr/local/bin/ksra…
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if A is orthologous to Y
and
B is orthologous to Y
then A and B are paralogs
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Dear @cwnelson88 ,
Thanks for implementing these solutions in these scripts! These are hugely time-saving for anyone interested in accomplishing gene-centered population genomics!
I have some qu…
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When I submitted a mutation:
NM_001164277:c.925_928delinsTC
to Transvar
with these options:
Reverse annotation cDNA, GRCh37, RefSeq
I got "p.G309Sfs*3" and "chr11:g.118896734_118896737d…
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Hi Brian.
I've moved on to EVM after talking with you about TransDecoder yesterday. I'm trying to use Exonerate protein2genome alignments from a Maker run as input to EVM. I'm am wondering about ge…
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When a gene product has a paralog,
we need some way of linking the orthologs
Implement count column for orthologs and paralogs
Example
YJR066W matches both Tor1 and Tor2
But you don't know …