zwdzwd transvar issues - Githubissues

zwdzwd / transvar

TransVar - multiway annotator for precision medicine

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If any existing database the stores annotations

#61 yanrongz opened 7 months ago
0
transvar does not process hgvs expressions for inversions?

#60 DavidTamborero opened 1 year ago
0
Problem in EnsemblDB for gene_ids with lowercase characters and no gene name

#59 manulera opened 1 year ago
1
Update for Apple M1 chips

#58 TaylorRPatterson opened 1 year ago
0
Incomplete candidate_snv_variants and candidate_mnv_variants result

#57 DongxueMao closed 2 years ago
0
panno batch example

#56 XimenaBo opened 2 years ago
1
discrepancy on genomic annotation

#55 vswilliamson opened 2 years ago
0
http://transvar.info/transvar_user/annotations/ is not correct?

#54 971202 opened 2 years ago
2
AttributeError: 'RefGenome' object has no attribute 'faidx_handle'

#53 LiviaMoura opened 2 years ago
3
Fix/import newest version of refseq

#52 joe-albert closed 2 years ago
0
Cannot index against the newest version of refseq

#51 joe-albert closed 3 months ago
0
Reference files missing from server

#50 joe-albert opened 2 years ago
1
panno mode couldn't find coordinate Ensembl transcript ID

#49 zhouzhendiao opened 3 years ago
0
Deviation from HGVS recommendations

#48 ktrien opened 3 years ago
0
Does/will transvar support Windows?

#47 geoffreyzhangiai opened 3 years ago
0
question concerning implementation HGVS 3´ rule of variants

#46 ktrien opened 3 years ago
0
Missing some characters of amino acid name when use `panno`

#45 wei-linlin opened 4 years ago
0
problem with transcript to genomic coordinates conversion when UTR spans more than 1 exon

#44 XiaoJianfeng opened 4 years ago
0
Bug in annotation download code?

#43 adfnih closed 3 years ago
4
Can't index from GTF files for C. elegans

#42 Snuce opened 4 years ago
0
chr8:g.145737904C>T protein change failed

#41 Gerosyclouds opened 4 years ago
0
Performance improvements (suggestion)

#40 gzalo opened 5 years ago
1
config.py links for raw transcript tables

#39 zmiimz opened 5 years ago
0
convert variant annotations from TransVar into a basic MAF

#38 zmiimz opened 5 years ago
0
record.py format_group grouping settings

#37 zmiimz closed 5 years ago
1
inconsistent InFrameInsertion annotation

#36 shannonnana opened 5 years ago
1
missing and inconsistent protein annotation usage

#35 git-jemiller opened 5 years ago
1
Inconsistent position

#34 bitsyamagu opened 5 years ago
12
Enable handling of complexed indels

#33 mmoisse closed 5 years ago
0
Speed up fetch_sequence

#32 mmoisse closed 4 years ago
0
Performance issue in faidx.py fetch_sequence

#31 mmoisse closed 4 years ago
2
three different results for the same canno input - which one is correct?

#30 orthoceros opened 5 years ago
0
some error message in the info field are not self-explanatory

#29 DavidTamborero opened 5 years ago
2
How to get transcript version number?

#28 lvran1234 opened 5 years ago
1
Different position converter result?

#27 xiucz closed 6 years ago
3
failed annotation complex variant

#26 kjass001 closed 5 years ago
3
Choose Ensembl release when downloading annotations + Python 3 compatibility issues

#25 jordeu closed 6 years ago
2
Problems with UniProt support

#24 grayfall closed 6 years ago
4
hotfixing UnicodeDecodeError in annodb

#23 grayfall closed 6 years ago
0
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x80 in position 0: invalid start byte

#22 grayfall closed 6 years ago
1
c.-22A>G works, c.-19-3A>G doesn't

#21 mjafin opened 6 years ago
1
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x80 in position 0: invalid start byte

#20 kantale opened 6 years ago
1
inconsistence

#19 hh1985 opened 7 years ago
2
c. annotations don't align with 3' genomic annotations on reverse strand

#18 RDuren opened 7 years ago
0
how to annotate using rsID?

#17 gpcr opened 7 years ago
0
can't download reference genome/annotation

#16 shoy91 opened 7 years ago
7
Fix TypeError in deletion.py

#15 annadcunningham closed 6 years ago
1
Reference sequence doesn't exist error after following example

#14 kuanlinhuang closed 7 years ago
4
need more annotated intomation from vcf input

#13 die4live closed 8 years ago
2
ganno batch example

#12 cboustred closed 8 years ago
1