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ESKAPE pathogens found in https://www.nature.com/articles/s41597-022-01463-7
Datasets for benchmarking antimicrobial resistance genes in bacterial metagenomic and whole genome sequencing
https:/…
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The values I'm trying to optimize are percentages, such that the sum of all genes should be exactly 1. Is there a way to enfoce this in PyGAD?
I can keep each gene individually bound [0, 1] with the …
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### Enzyme, ADAR (proof-read and correct mistakes in RNA)
[**ADAR editing enzymes** are found in all multicellular animals and are conserved in sequence and protein organization. The number of ADAR g…
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It would be good to explicitly validate the clades.tsv file and give a helpful error message if it doesn't conform to expectations.
This would help users like this one, who opened issue https://git…
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Thanks for making a such a beautiful program. I read the paper and it impute the genes in spatial data using scRNA-sequencing data. I was reading following tutorial
https://uniport.readthedocs.io/en…
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Hello,
Thank you for developing ESPRESSO! As a newcomer to this field, I am seeking some guidance. I am working with nanopore sequencing data from a local pig breed. The reference genome annotation f…
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Hello,
I ran TRUST4 on my whole-genome sequencing data, and got the report.tsv file.
Something from the report I don't get is why some clones only have the V gene usage information and not D and J g…
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CNVkit is a best python package to infer copy number information from high-throughput sequencing data
Actually, We are very excited to find that you have provided new function within the software pac…
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This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
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Dear author,
Thanks for resolving the previous issue we raised. We were trying to apply SONAR on another dataset and ran into an error while executing the R part of the code while running SONAR.pre…