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So, how was this error solved? I am also tackling the same issue. In my case, the error occurred for some loci but not for other loci. I will really appreciate it if anyone could provide a solution. T…
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Hi,
When I tried to run HDL with your test data, I met error like this " HDL: High-definition likelihood inference of genetic correlations and heritabilities (HDL)
Version 1.3.8 (2020-07-12) install…
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## Keyword: sgd
### Doubly Stochastic Models: Learning with Unbiased Label Noises and Inference Stability
- **Authors:** Authors: Haoyi Xiong, Xuhong Li, Boyang Yu, Zhanxing Zhu, Dongrui Wu, Dejin…
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Hello Paul,
Currently, when implementing correlated random effects with structured covariance, e.g. in a bivariate phylogenetic model
`m1= bf(trait1 ~ 1 + (1|G| gr(phylo, cov = A))`
`m2= bf(t…
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In #52 we added the ``sim_trait(ts, num_causal)`` function which returns a pandas data frame with num_causal rows. It seems to me that we will often want to simulate multiple traits, which perhaps we …
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Issue opened to collect info about possible future SPSA improvements.
### SPSA references
SPSA is a fairly simple algorithm to be used for local optimization (not global optimization).
The wiki h…
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Hi again,
I was wondering how the upset plot data is laid out for individual assignment. It looks like you converted singlets to "1" and anything labelled as a doublet to "0" for the upset. However, …
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Hi, I wanted to perform multiple regression analysis. I think everything was fine including strong and highly significant bivariate correlations estimates and p-values, respectively. However, multiple…
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Original plan (issue name was "Add Correlations section to FR-FG Risteys and rename"):
- [ ] Get correlations section back to FR-FG version as it is now in FinnGen Risteys & show clearly that it's Fi…
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Hi Florian, I have gotten the following warning when running `snp_cor` to compute the per-chromosome sparse LD matrix for chromosomes 1-3,5,6 from ~155K UKB individuals from imputed data.
```
Warn…