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Hello, I have been excited to try this tool for off-target prediction and finally got to play with it today. Unfortunately, I can't seem to get it to work. The issue is a `NullPointerException` that a…
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Hi
I'm a green hand of Hi-C.
What are the recommended parameters of `chromosight detect --pattern borders`?
Especially `min-dist` and `min-dist`.
What I have used is
```
chromosight detect \
…
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Hello, I'm very curious to try out COMICS, but can't install it. I find the following error
```> devtools::install_github("JTNelsonWSU/COMICS", build_vignettes = TRUE)
Error: HTTP error 404.
No…
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Hi Jiaqi,
It is cool that the predicted signal is highly consistent with other epigenetic signals the model never see.
But, as Nvwa is a classifier for gene expression, how to make the model predict…
Witiy updated
2 years ago
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I have a collection of fn files for bacteria,How do I create my reference genome as a database?
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Hey,
First of all thanks for this new implementation of the kallisto software with the D-reference you included in your recent paper *"Accurate quantification of single-nucleus and single-cell RNA-…
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hi,
I download the vOTU.fna (There are 5251 vOTUs in there.)data in the text and used the MGV pipeline(https://github.com/snayfach/MGV/tree/master/viral_detection_pipeline), like this
````
cond…
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Hi all,
I'm curious if anyone has run a power analysis on the pcangsd selection scan or has thoughts on the below graph. Also let me know if there's a better place to post this query (a discussion …
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I got the foolowing error messages for about 1/3 of my single cell wgs after running latest scansnv as of today (12/6/19). Any ideas? For those cells with errors in the log, some produced file somati…
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Dear author,
Thanks for developing this interesting tool! I've successfully tested on the demo data, but I got issues running the following command on my own assemblies.
I first tried the follow…