Rosemeis pcangsd issues

Rosemeis / pcangsd

Framework for analyzing low depth NGS data in heterogeneous populations using PCA.

GNU General Public License v3.0

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issues

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wrong version numbering

#91 smoors opened 1 week ago
0
selection and pcadapt output questions

#90 lkrichardson opened 1 month ago
2
Covariance matrix estimation does not converge when using one thread

#89 huiqingyeooo closed 1 month ago
2
--sites_save options reports only 0s

#88 shyama-mama closed 2 months ago
1
ZeroDivisionError: float division by zero, new "old" error

#87 cbossu opened 4 months ago
1
pcangsd didn't converge!!

#86 NeethuCherukuri closed 2 weeks ago
7
zcat: can't stat

#85 EwersAquaGenomics closed 6 months ago
1
-sites_save returning only 0s

#84 nickylustenhouwer closed 8 months ago
3
Import Error

#83 isnmn opened 8 months ago
8
How is the K chosen in the program?

#82 yksakana closed 2 weeks ago
4
-sites_save option outputs zero value for all markers

#81 yksakana closed 8 months ago
2
build failure when installing with conda

#80 nrcombs opened 9 months ago
1
Packaging in Conda

#79 lecorguille opened 9 months ago
1
latest version (1.10) has not been tagged

#78 jowodo closed 10 months ago
3
P-values equal to 0 from pcadapt

#77 akimmitt opened 10 months ago
7
request: add SNP locus metadata to SNP weights output?

#76 TeresaPegan opened 1 year ago
1
Adding a pyproject.toml file

#75 alxsimon closed 10 months ago
3
Feature Request: Improved Convergence Checking

#74 ajasonowicz opened 1 year ago
2
SNP loading values from PCs using --selection_e

#73 HomereAMK opened 1 year ago
3
Kinship matrix in pcangsd

#72 ThibauldMichel opened 1 year ago
1
cannot import name 'reader_cy' from 'pcangsd'

#71 cnxiaobo94 opened 1 year ago
3
output of -selection

#70 shirasegoby opened 1 year ago
5
ImportError: cannot import name 'reader_cy' from pcangsd

#69 ashno376 closed 1 year ago
1
Different result among versions, same dataset

#68 Ittybittyweeny opened 1 year ago
4
Confussion between tutorials

#67 Ittybittyweeny closed 1 year ago
2
How to format a --filterSites file?

#66 TeresaPegan opened 1 year ago
1
How to perform a HWE test?

#65 beausoleilmo closed 1 year ago
2
PCAngsd detects one fewer sites than it's given

#64 jtoy7 opened 1 year ago
4
How to resolve an apparent memory issue PCAngsd

#63 BKrek89 opened 2 years ago
3
Cynthonization behaving strangely

#62 ghost opened 2 years ago
6
Cythonized pcangsd.py not working

#61 emrullahub closed 2 years ago
11
Segmentation fault (core dumped)

#60 katcatalano closed 2 years ago
2
Support for VCF input

#59 fgvieira opened 2 years ago
0
[Support] Using PCAngsdv2 to determine kinship

#58 fidibidi opened 2 years ago
0
expected unicode, got str

#57 yungsiyebu closed 2 years ago
5
Selection scan - positions?

#56 hyperoplus opened 2 years ago
5
Negative eigenvalues

#55 elizeng opened 2 years ago
1
No module named 'reader_cy'

#54 DcornishUCL closed 2 years ago
7
Sample projection

#53 xinsun1 closed 3 years ago
2
Reformating for easier packaging

#52 alxsimon closed 1 year ago
0
Genotype likelihood matrix format inside pcangsd (L)

#51 alxsimon closed 3 years ago
2
Memory issue while parsing beagle file

#50 ddenney1 closed 3 years ago
2
Inflated p-values from selection scan?

#49 kellybarr opened 3 years ago
8
TypeError: 'offset' is an invalid keyword argument for fromfile()

#48 samarth8392 opened 3 years ago
1
NJ Tree and PCAdapt outputs

#47 emilya21 closed 3 years ago
3
error: "Argument 'beagle' has incorrect type"

#46 nreid closed 3 years ago
2
UnboundLocalError: local variable 'pr' referenced before assignment

#45 lauraivillegasr closed 3 years ago
2
-filter error

#44 alxsimon closed 3 years ago
7
PC loadings?

#43 TeresaPegan closed 3 years ago
4
Large log likelihood when running Admixture

#42 bpbentley opened 3 years ago
2