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When I run MAESTRO on the ATACseq tutorial (atac_pbmc_500_nextgem), I get the above error. If I probe further, the error is:
Error in irlba(A = t(x = object), nv = n, work = irlba.work) :
max(nu,…
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Hello there,
I am analyzing single cell ATAC data obtained from PBMCs. For the cellranger analysis I mapped my data against a custom genome (Human and virus mixed genome). For the analysis, I was fo…
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Could this be a requirement for the matrix package version?
> Sys.setenv(LANGUAGE = "en")
> library("variancePartition")
> data(varPartData)
> form varPart sessionInfo()
R version 4…
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Hello, I appreciate for this great tool.
I have several issues while I draw plots locuszoomr and arrange other plots with cowplot.
First, when I get recombination rate, it always return error.
H…
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```R
── R CMD build ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
✔ checking for file…
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**Submitting author:** @bjmt (Benjamin Jean-Marie Tremblay)
**Repository:** https://github.com/bjmt/universalmotif
**Branch with paper.md** (empty if default branch): paper
**Version:** v1.23.2
**Edit…
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I have a cellxgene count matrix, a cellxtranscript count matrix, and a whitelist of high-quality barcodes from ONT's EPI2ME Labs' wf-single-cell. Can this be used to create a SingleCellExperiment obje…
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Hello,
I am trying to use vizAPA for a research project. I have Sierra generated data and tried to import it to create a PACdataset.
Everything was okay until I try to find markers. I thought the pr…
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When I try to install the package in R in a Linux environment, all installation methods give a non-zero exit status.
I have updated both R and R studio to R.4.3.1
See Error messages below:
/us…
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Hi,
I've just tried your package and like the idea, but I'm running into an issue with overlapping gene names.
I'm trying to visualise copy number changes over medium-sized regions (say a Mb or tw…