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The NiiVue project uses WebGL 2.0 to provide interactive web-based visualization capabilities for viewing medical imaging. We have started to meet with NiiVue developers to discuss possible avenues …
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## General Approach
In the absence of a formal write up (which I will upload shortly before JuliaCon) the strategy for development throughout this org is this: Write the code we need to do neurosci…
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I've been reading BEP003 (#265), and I'm uncertain how to handle the naming of T1w/T2w ratio images (ex: the HCP dataset `/T1w/T1wDividedByT2w.nii.gz`).
Perhaps `_desc-dividedByT2w_T1w.nii.gz`?
…
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Hi,
ciftify gives me the following error:
/Users/neurolab/opt/anaconda3/lib/python3.7/site-packages/ciftify/utils.py:286: YAMLLoadWarning: calling yaml.load() without Loader=... is deprecated, a…
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Hi,
I know the benchmarking in the BayesfMRI paper used the INLA implementation, but I have been testing the EM version (2.0 latest commit) and have been getting very long run times compared to the…
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This uses very similar idioms: https://github.com/cran/RArcInfo
It's designed for .e00 format which is natively "arc-node" topology, i.e. the same as the underlying structures in the maps package, …
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Hi Emma,
I'm so confused why and how to determine the refdata (--refdata=*.func.gii)?
Different refdata could lead to different results or it is just a reference of coordinates and space?
J…
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* **What are you trying to do?**
I'm trying to resample the template gradient map included in your toolbox onto the Freesurfer template surfaces (`fsaverage`) following the [HCP wiki instruction](htt…
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Hello,
I have completed the resting-state fMRI preprocessing based on fmriprep 20.1.1. When I checked the results in den-91k space (i.e., files named ...fsLR_den-91k_bold.dtseries.nii), I found there…
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as of 0.4a57
sample code:
```python
import siibra
p = siibra.parcellations["julich brain 2.9"]
type(p.get_map("fsaverage", "labelled").fetch()) # returns
type(p.get_map("mni152", "labelle…