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I'm getting a tool error, trying to apply some rules to a collection.
Rules
- Add column for identifier0.
- Add new column using I18-....-.. applied to column A
- Set column B as List I…
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Hey, many thanks for this awesome tool !!!
I try to fine tune for _Arabidopsis thaliana_ with more RNA seq data.
Below are the commands I used, but I got the error when I ran filter-to-most-certa…
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Note: this is my open planning doc for this project. Any feedback/suggestions welcome!
cc @freeman-lab @mckinsel @olgabot
# Overall goals
Use tabula muris data and experiences to help understand …
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In order to take full advantage of MultiQC's aggregation report, it needs to find consistent sample names across various datasets. Thus, whenever possible, MultiQC should be using `element_identifier`…
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Hello,
I ran the following command to get the read counts:
`htseq-count -s no -r pos -t CDS -f bam sample2.markdup.bam sample2.map.gtf > sample2.count`
The runs smoothly and produces an outp…
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Hello,
I recently ran into some problems with TCGAbiolinks.
I used the TCGAbiolinks package in april 2018 to download the bladder cancer set and ran some analysis. Unfortunately I don't know which v…
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**Describe the bug**
DCC quits when trying to combine individual circRNA read counts. This is only when I run it using a docker in an interactive queue:
bsub -Is -q research-hpc \
-a 'docker(budde…
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I have a custom MultiQC module called `target_phasing`, which can be found [here](https://github.com/lumc/multiqc_pgx). It runs in MultiQC v1.11 and before, but not in MultiQC v1.12 or later. The modu…
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Hi, thanks for writing transIndel and making it available to the community. I am trying to identify indels in a set of sequence reads originating from a Cryptosporidium isolate. I noticed this error: …
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Hi,
I ran this command 2 weeks ago, it ran perfectly.
query = GDCquery(project = 'TCGA-LUAD',
data.category = 'Transcriptome Profiling',
data.type = 'Gene Ex…