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### Context
A user requested GSE149512 for the search term ["GSE149512"](https://www.refine.bio/search?q=GSE149512)
### Problem or idea
(Add description of experiment/problem here)
…
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Hi,
Thanks for the convenient tools!I have some confusion for the results. It can be seen that the total copy number of smn in the figure is about 1. The last bar chart shows that smn1 has more c…
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Base calling, is the systematic assignment of nucleobases to chromatogram peaks in case of electrophoresis, current changes resulting from nucleotides passing through a nanopore in case of Nanopore se…
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Project: ENCODE
So - we are working with a new High Throughput Sequencing Assay: icSHAPE, that captures RNA secondary structure.
NTR: "icSHAPE"
Editor preferred term: "icSHAPE"
Alternative…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Description of the Bug/Issue
Hi all,
First, thanks for all the work being done on this pipeline.
I'm ha…
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## Bug Report
### Affected tool(s)
IlluminaBasecallsToSam
### Affected version(s)
- [x] Latest public release version [2.25.6]
### Description
I get a `java.lang.NullPointerException` wh…
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Hi there,
I'd like to know why, for some projects (such as TCGA-DLBC), the query returns only "primary tumor" sample types, despite on TCGA it is also present "blood derived normal". I notice that t…
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I am trying to install RSEM but not able to see software sub-directory. Moreover not sure what is $(your_favorite_location) in the clone command?
Please advice..
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### Description of the bug
When I tried to run **nf-core/viralintegration** pipeline on `test_full` profile option I encountered an issue. An issue is related to segmentation fault (exit code 139) …
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### Description of the bug
Hello.
I am trying to use viralrecon as to detect variants with a minimun frequency of 0.1. Nevertheless, when using viralrecon with the instructions given below, I have …