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Hi there,
As shown in the paper of seqwish, the genome graph induced by wfmash+seqwish is unbiased, i.e., the graph will not be changed by the order of input genomes. However, a recent paper, "Com…
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Hello,
I am doing this part of your code:
i in {1..22}; do ./plink --bfile ./imputed_plinkfile/1Mv1imputed_chr${i} --extract ./Imputed_1000G/chr${i}exclude.txt --make-bed --maf 0.05 --geno 0.05 …
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Hi all,
I was just reflecting on miceforest's imputation strategy, and I wonder if it may underestimate uncertainty in missing values.
In classical multiple imputation methods that use a Gaussia…
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One of the requirements for PSL acceptance is to adopt a versioning system. Additionally, if we do end up making a standalone taxdata package/CS app we'll need to specify versions as well. Semantic ve…
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When a region is missing wind or solar profile data, we first attempt to impute wind and solar profiles based on averaging the wind or solar profile from directly-interconnected balancing authorities …
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Great package, I find it very useful for imputation and a lot better than many alternative methods. What do you think about changing the random forest engine from "randomForest" to one of the newer pa…
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In some test cases I noticed that there is missing values in the middle of training data. Say if we want to train the model with data between March 1st to Oct 31st. The data might be missing between O…
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There are many approaches that folks use to model populations and communities. Yet, there seems to be a barrier to entry for modelers to create forecasts, as seen with the ground beetles theme for the…
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We have funding for three away days (one in every 6-month period) and we need to decide what we will use them for.
Options include (but are not limited to):
- synth-a-thon with Ed Manley
- Bring …
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Integrate external packages for low-level mapping.