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Hi
So I am not exactly working human genomes at the moment but rather a set of synthetic fusions designed to mimic fusion genes. How it works is we generated an in silico chromosome, rearranged it…
dwooi updated
3 years ago
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After installing the 3d-e-Chem nodes in KNIME 3.6.0 for Linux (Linux Mint 19 64-bit Xfce, based on Ubuntu 18.04 64-bit), upon starting KNIME, I get the following warnings in the KNIME console:
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Hello,
I have install all of the dependencies and was able to kick off inxalizer with these parameters :
-la clone -r $REF -scn 2 -vn 1000 -sa linear -t 8 -o $myOutput -vb 1
It runs for several …
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Dear team,
Thanks a lot for providing scGPT for biological researchers. You provide a tutorial for perturbation prediction using Adamson or Norman's datasets. However, I am still confused about h…
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Hello,
I am trying to create an in-silico predicted spectral library in DIA-NN and I am interested in detecting variable carbamylation of lysine (K) and arginine (R), as well as the carbamylation a…
buijt updated
8 months ago
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Dear Vadim,
I hope you are well. I have used your software successfully many times for SWATH data. This is my first time using it for diaPASEF data. I initially loaded it up with variable mods in th…
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- [ ] Add column selector for In Silico Prior Probabilities (overall prior displayed)
- [ ] Add column selector for Literature Search results (number of papers displayed in column)
- [ ] Add intron…
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Hi all, I am trying to use shtab for the first time. I would like to autocomplete a positional argument from a
list. I made a choice function `titleselector` that selects from a list based on a pref…
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Hi Emre,
I have just read your wonderful work "Network-based in silico drug efficacy screening. Nat. Commun. 7:10331" and try to reproduce your codes.
I see you calculate the AUC in proximity.ipynb…
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## User stories
- I am a computational biologist with my own data in H5AD or Seurat and I'd like to know which Census cells are the most similar to each of my own cells. I need to know the level of c…