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I'm concerned that timescales for adequate sampling of ligand motions in the non-interacting state may be sufficiently slow to cause unanticipated problems, and would like to discuss and find out how …
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Hi,
https://github.com/wguo-research/scCancer/blob/3f9eb9e878531d588594a132f00d60d6d38506c8/R/scAnnotation.R#L1325-L1326
Here it uses the 'counts' slot , i.e., UMI, to estimate the strength of l…
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Hi,
When running NATMI (docker) on bulk data from mouse with Ensembel IDs the code broke, due to a duplicated entry in ids/10090_ensembl.csv.
The duplicated id is:
ENSMUSG00000115016,AA536875
…
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Thank you for this quite useful and easy-to-use tool.
I used it so far on smaller datasets with some very nice results, but now I ran into a question:
I am working on 2 related datasets, control and…
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A video tutorial on this process can be found here: https://www.youtube.com/watch?v=ZnXBa9RdliU
![Untitled video (2)](https://github.com/TomkUCL/SARS-CoV-2-Helicase-nsp13-Public-Antivirals-Virtual-…
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Hi there
I have the results from the CPDB and in several rows within the genes columns, there are 'integrin'. I'd like to know which integrin gene is that? As you know, there are several integrin g…
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## Overview
Task list for development priorities for domino
## Intended Outcome
Serves as a central resource for highlighting developments or bugs to address and sharing them with the team wh…
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**Aim:**
This issue addresses how to apply LigGrep to filter through docked ligand poses to check that they retain key interactions with the protein that are observed in crystallographic fragment-p…
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Converting human genes to mouse homolog always have multi-hit problems. So I wonder if you have mouse genes?
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Hello again!
I've been trying out the bivariate approach with the Visium HD data, and I've been testing some of the parameters, mainly bandwidth and max_neighbours:
```
li.ut.spatial_neighbors…