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Hello,
I'm trying to run LTR_retriever with an LTRharvest output file, where I ran LTRharvest without the -motif TGCA option.
Here's my code:
LTR_retriever -genome ./PEP_scaffolder_300bp.fast…
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Hi:
when i run ltr_finder with cmd 'ltr_finder -a /home/usr/bin/ps_scan -t Hg17-tRNAs.fa -w 0 genome.fasta', the program exit with error "terminate called after throwing an instance of 'std::bad_a…
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@mcscimenc I moved your last bug report to this new thread.
Start forwarding:
OK, the program runs for a little while and now gives this error:
ERROR: No such file or directory at /home/joshd/s…
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Hi Shujun,
I was wondering if it's expected that there are many short sequences in ~.LTRlib.fa? Of the 8424 entries, 81 are 11 bp long, and 542 are less than 100 bp long.
Also, is ~.LTRlib.fa th…
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Hi @sestaton,
first of all thank you very much for this tool. I would like to do some analysis using Transposome so after I have prepared my input data I have ran it without errors. The problem is th…
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I want to transfer parse GFF3 file and show them as GTF file, but it doesn't work. The GFF3 file comes from LTRharvest and LTRdigest.
`gt gff3_to_gtf harvest_pig_sorted.gff3 -o test`
Mrwow updated
8 years ago
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Hi
Hope this is a quick fix!
please could the telomere ontology be re-arranged slightly.
Telomere maintenance via telomere lengthening should NOT be a parent to telomere maintenance via semi-conse…
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abolished VLP localization to nucleus during vegetative growth
VLP are virus like particles produced by LTR retrotransposons such as Tf1
Original comment by: Antonialock
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1. normal chromatin silencing at telomere
2. abnormal termination of transcription
3. increased level of antisense transcripts
4. increased repeat element RNA level
repeat elements include retrotra…
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are
increased repeat element RNA level
A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of any RNA transcribed from repeat elements, such as LTRs, retrotr…