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The rWikiPathways vignettes tell us how to do a gene enrichment analysis by the gmt file, which give the gene lists per pathway.
Now I want to do the enrichment analysis based on the metabolome dat…
qqwxp updated
2 years ago
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Hi, I am the author of this application for metabolomics:
https://mint.resistancedb.org/
https://lewisresearchgroup.github.io/ms-mint-app/
I need some functionality to explore data files a bit,…
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I am working on untargeted unlabelled dataset. I feel that Max Width and Max S/N Columns (Group Summary...) or Width and S/N Columns (Peak Detailed....) are important while removing noise from the pro…
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Something for Lucas to work on @Chris-Evelo
Common problem in metabolomics PW analysis:
- Metabolite datasets have outdated/secondary IDs, which don't map to the PW data.
- Example 1: [HMDB01046…
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**The Promise of the Biomine**
[Biomine](https://biomine.xyz/) is a blockchain-powered health monitoring and research ecosystem built by the people, for the people. Please read over our [website](htt…
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The following is a draft of what I'd like to send out to forums and anywhere else I can find researchers congregating.
As you can tell, I'm quite concerned about coming off like a slimy startup wh…
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There is an API which allows to easily retrieve pre-calculated tags of PubMed papers, with extracted bioconcepts including gene, chemical, disease, mutation and species:
![Screenshot from 2020-06-1…
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Hi,
On my local server, I created a study with subjects, design and sample.
I'm ready to upload data, but there's no modules and I don't understand how I could create one.
My module configuration:
##…
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I am getting problems when invoking workflows where optional input file parameters (i.e. the XML tool includes `optional="true"`) are left blank in the workflow.
The workflows will either not run a…
Tomnl updated
4 years ago
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Hello,
I'm trying to use MCIA for 16S and metabolomics data integration, but am getting an error.
The error reported is: ''svd' fail to convergence, 'eigen' used to perform singular value decom…