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wikipathways
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rWikiPathways
R package for WikiPathways API
https://r.wikipathways.org/
MIT License
15
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6
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downloadPathwayArchive not working
#37
Jorges1000
closed
1 month ago
1
latest article needs to be added
#36
egonw
opened
2 months ago
0
404 error when trying to use clusterProfiler::enrichWP
#35
d-henness
closed
4 months ago
2
How to extract just metabolic subset of genes?
#34
avelar-ageing
opened
8 months ago
3
Json api
#33
AlexanderPico
closed
1 year ago
0
get push rights in the BioC repo
#32
egonw
closed
1 year ago
3
Updates for Release 3 16
#31
egonw
closed
1 year ago
3
getXrefList(...) method is broken
#30
OliveIsLazy
opened
1 year ago
14
how to metabolite enrichment analysis
#29
qqwxp
opened
1 year ago
1
update pathway analysis vignette
#28
AlexanderPico
closed
2 years ago
0
https for downloadPathwayArchive
#27
AlexanderPico
closed
2 years ago
0
Error in function (type, msg, asError = TRUE) : SSL certificate problem: certificate has expired
#26
duanxiaoqian
closed
2 years ago
4
igraph compatible?
#25
emantzo
closed
2 years ago
1
downloadPathwayArchive() not working
#24
AlexanderPico
closed
1 year ago
3
Updating the location following further mavenization of BridgeDb
#23
egonw
closed
3 years ago
1
downloadPathwaysArchive doesn't work with redirects
#22
AlexanderPico
closed
3 years ago
0
Updated the BridgeDb URL to the datasources (dev version)
#21
egonw
closed
3 years ago
1
Updated the BridgeDb URL to the datasources (release version)
#20
egonw
closed
3 years ago
0
Link to BridgeDb datasource list in documentation is wrong
#19
mkutmon
closed
3 years ago
2
Add emap section to PathwayAnalysis vignette
#18
AlexanderPico
closed
3 years ago
1
proper acknowledgement
#17
GuangchuangYu
closed
4 years ago
2
GMT parsing is missing
#16
AlexanderPico
closed
4 years ago
3
Minor/vignette updates
#15
egonw
closed
4 years ago
1
commit 2ba575e338706e1c6ffa7707e7d10ff78839e71a undid earlier fixes
#14
egonw
closed
4 years ago
2
loading of BridgeDbR does not happen authomatically when using getXrefList()
#13
egonw
closed
4 years ago
1
Update README to clarify the version of R required
#12
jlaw9
closed
4 years ago
2
Procedure to remove getColoredPathway function
#11
AlexanderPico
closed
3 years ago
2
How to extract edges from GPML file ?
#10
Krithika-Bhuvan
closed
4 years ago
2
`getColoredPathway` should recognize if the remote API method is offline
#9
egonw
closed
4 years ago
4
migrate away from RJSONIO to rjson
#8
egonw
closed
4 years ago
2
findPathwaysByText should return data.frame rather than list?
#7
kozo2
closed
4 years ago
1
Add R function to highlight genes by name/ID rather than graphID
#6
AlexanderPico
closed
4 years ago
1
Added BioSchemas annotation to the Vignettes
#5
egonw
closed
5 years ago
2
downloadPathwayArchive requires XML
#4
AlexanderPico
closed
5 years ago
0
Add method to retrieve gmt files
#3
AlexanderPico
closed
6 years ago
1
getXrefList does not work correctly for WP3620
#2
kozo2
closed
6 years ago
3
Multiple colored nodes are not supported
#1
shivangi1787
closed
6 years ago
2