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http://rs.tdwg.org/dwc/terms/#Taxon
Not sure yet where the best place is to put this support.
May want to not mess with the current functions, that is, allow users that don't want to deal with …
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Apologies if this has been discussed before or is an easy fix!
I've just been introduced to metacoder and I want to be able to use a phyloseq object as an entry. I can get the code to work pretty …
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y aab, NA->aac, aab->aad, aab->aae ... cre->hqm, bjf->hqn, blu->hqo, bwl->hqp
4 data sets:
otu_table:
# A tibble: 42,559 x 43
taxon_id otu_id JZ03601 JZ03602 JZ03603 JZ03701 J…
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Hi, thank you very much for this great tool!
I struggle a bit understanding all the functions of it so far.
My understanding is that metacoder will not plot ASVs (or OTUs) but the related taxonomy…
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It would be very good if we could define one specific condition as control and plot all against this single condition.
I couldn´t find a way in the documentation, is it possible? It is especially im…
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Hi,
I would like to calculate the differences between two groups of metagenomic samples using the compare_groups function.
My concern is that I have a low number of samples in each group (4 vs 3…
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Hello,
Thanks for this great package. It is extremely useful for my dataset.
I am running into a few issues that I’m hoping you can help with. The main issue is I am unable to generate a heat…
ghost updated
4 years ago
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Hello,
I finally got through the scripts to the point where I am trying to tweak my Log2FC heat.tree
I get a tree with no issues if I use the following script
set.seed(1)
obj6 %>%
heat_tree(…
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Regarding the differential heat tree, how I can print the taxon list table for the differential heat tree after Wilcoxon rank Sum test? The taxon list should include the more abundant taxons for both …
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Hello,
I have an issue with the `compare_groups` function.
I want to create a heat tree matrix for which I use `compare_groups` on relative abundance counts created with `calc_obs_props`. But it wil…
LChWu updated
2 years ago