-
Hi @JenniNiku ,
a colleague recommended your R package for GLLVM and I am very curious, how you applied this approach to microbial data, specifically sequencing data. As sequencing data is compositio…
-
Run this command: nextflow run main_AMR++.nf --help
But it shows this error;
Error executing process > 'FAST_AMRplusplus:FASTQ_TRIM_WF:runqc (S3_test)'
Caused by:
No such variable: TRIMMOMAT…
-
Create project sticker.
See [hexSticker package](https://github.com/GuangchuangYu/hexSticker).
How about just "mia" and/or "OMA" sticker with no more explanation? That might be more compact tha…
-
the project https://github.com/JuliaPackageComparisons/juliapackagecomparisons.github.io
is something the julia community and especially newcomers can benefit dramatically from. Now with the advent…
-
Aitchison distance and its robust version have become frequent choices in the analysis of microbial communities, where compositional data is ubiquitous. The ability get access to these through a dedic…
-
Hi,
I'd like to first note that I'm a nearly complete novice in metabolic modeling and systems biology
I'm interested in microbial auxotrophy, and I want to predict auxotrophies using only genom…
-
Hi @wilkox,
Thanks for a very nice package. Really helpful. However, I'm having trouble putting all my genomes on a common numerical axis starting from the gene on which they are centered (BRD2, in…
-
Hi Daliang,
In the PNAS paper, you mentioned that NST should range from 0 to 1. However, in my results I found that NST.ij.bray/NST.ij.bMNTD does not range from 0 to 1. The MSTij.bray/MST.ij.bMNTD …
-
A list of participants, with affiliations and a short (one paragraph) biographic profile including description of their expertise contributed to the working group. Please distinguish between those who…
-
I suggest to add Yue-Clayton (dis)similarity index ([Yue & Clayton (2005)](https://doi.org/10.1080/STA-200066418)) as a new vegan::vegdist option. This is used in microbial ecology at least.
I alre…