-
## MitoZ version?
3.4
## How did you install MitoZ? (e.g. Docker, Udocker, Singularity, Conda-Pack, Conda, or source code)
Conda-Pack
## Did you run a test after your installation, and was the tes…
-
Reads which have a relatively short sequence that does not map to a reference sequence and a relatively long sequence which maps perfectly to one end of a reference sequence aren't mapped. Is there an…
-
Hello, I am using salmon for an RNAseq experiment but I m getting very low mapping rate (0.03%!) and a strong strand bias (0.96). It never happened before and I can not understand the cause. I have al…
-
Hello everyone,
I've tried using the config.16s.yaml with the test data it works fine. However, when I try running a dry run using my own data it prompts me this error.
You will not be able to…
-
Hello developers!
Thanks for this great work.
Due to how Strainy works, I find attractive to try to use it for haplotype assembly of human mitochondrial genome, do you think it might work?
A…
-
Hello,
I am running MitoHiFi on an insect genome assembly using singularity on an SGE grid. I first built the tool using:
`singularity build mitohifi.sif docker://ghcr.io/marcelauliano/mitohifi…
-
Hi,
This looks super-cool, but do you plan to publish any instructions on how to use it also? :)
Another small question. You state in your paper for PROTAX-GPU that...
> [...] before computing …
-
Aside from downloading data, it seems like a bottleneck for adding new datasets is generating riboviz-style fasta and gff files. There is currently `rmarkdown/script_for_transcript_annotation.Rmd`, bu…
-
Hi @kimrutherford @ValWood,
I was drafting the email to announce the changes, but I realised a few things that perhaps we should address:
* [x] A lot of "new genes" lacking references: both [pro…
-
* **PTHR ID & PTN node:**
PTN000048763
DNA LIGASE 1/3 FAMILY MEMBER PTHR45674
* **Sequences with problematic annotation (ID + gene/protein name):**
For FlyBase: FBgn0262619, DNAlig1
mitochondr…