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Hello,
I successfully ran the following command for each of my samples, and got one .json file for each sample
```
mixcr postanalysis individual --default-downsampling count-read-auto --default-w…
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Hello,
It would appear that there are [some protocols](https://www.science.org/doi/10.1126/science.adf8486) out there that combine 10X barcoding with long reads. Their analysis workflow has them pr…
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Hi,
Which parameters should I use to detect somatic hypermutation (SHM) in the command "mixcr analyze exome-seq".
or can I use "mixcr analyze exome-seq" to detect somatic hypermutation (SHM).
…
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bash mixcr exportPlots diversity -Xmx90g --metadata metadata.csv --plot-type violin --primary-group event --primary-group-values NO,YES,none --hide-non-significant --p-adjust-method BenjaminiHochberg …
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[Chen G, Yang X, Ko A, Sun X, Gao M, Zhang Y, Shi A, Mariuzza RA, Weng NP. Sequence and Structural Analyses Reveal Distinct and Highly Diverse Human CD8+ TCR Repertoires to Immunodominant Viral Antige…
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This is an example image and explanation posted on MiXCR website. I could not fully comprehend what the threshold was accomplishing.
In general, during refineTagsAndSort, it seems to correct hug…
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Hello,
While running MiXCR4.1.2 I ran in an issue with 2 of my files where the .clns file was produced but the rest of the steps stop working. Here's the output
```
Assembling initial clonotypes:…
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## Error while running exportPlots shmTrees
`mixcr exportPlots shmTrees -m metadata_part1.tsv --node-color condition --ids 1424 part1_trees.shmt Mutant_shm_trees_1424.pdf`
**_Error while runnin…
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Hi,
I am experiencing a problem when running the CATT Docker image. The test sample runs fine, but other .fq files fail at the Aligning stage with a LoadError. The files seem to be normal, but they…
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Can mixcr analysis single chain Fragment variable (scFv) within which both V region of heavy and light change are linked by a linker sequence.
d-jch updated
2 months ago