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(from poldracklab/smriprep#25)
http://www.bic.mni.mcgill.ca/ServicesAtlases/MacaqueDownload
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ILT share is still in /opt/minc/1.9.16/share/ILT while only /opt/minc/share is in MNI_DATAPATH.
Not sure if this should be fixed here or in the packaging?
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I am wondering what people usually recommend in the literature nowadays for comparison between children (e.g. 8 - 12 y) and adults.
Shall we
1. use a customized brain template generated from all the…
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I preprocessed my data using fmriprep. I'd like to use the data that's transformed to the MNI Asymmetric template and been denoised with AROMA (e.g., *bold_space-MNI152NLin2009cAsym_variant-smoothAROM…
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Dear Micapipe developers,
I tried to run micapipe on sub-HC001 in MICs dataset, and used commands same as the example. All status seemed to be completed, but all QC reports except "proc_structural"…
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Should `ANTsRCore` be able to read in MNC files? If so, tried one out with colin27 minc from http://www.bic.mni.mcgill.ca/ServicesAtlases/Colin27 and got an error.
``` r
library(ANTsRCore)
#> …
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Once the papers have been filtered (#11) - key part of the preprocessing will be
- [x] determining the neural space used (MNI coordinates? atlas? which one?)
Whatever the paper is using,
- …
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See discussion #3074.
We need to better explain:
- the fact that the atlases were generated using a specific version of the MNI template (for example by listing that version in the docstrings o…
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Hi,
I'm running Fmriprep on patients with huge brain lesions, and I got this error for two of my patients.
This is the code I'm running: **fmriprep-docker /home/shymaa/Desktop/my_dataset/Participan…
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Dear all,
After I finish the vertexLm and get the t-value thresholds with vertexFDR, I needed to go to minc Display and get the MNI coordinates of each significant PEAK by hand. I could not find a …