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We need to settle on a pattern for defining receptor activities. This may provide a good starting point for patterns for other compound functions. This ticket discusses possible patterns.
Like all …
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I haven't looked deep into the codebase yet, but from what I can gather you use `pdb2pqr` to calculate the electrostatics of a system that you can then use for display & creation of field lines etc.
…
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When trying to read this file (and other similar ones), I get:
```julia
julia> read("vmd.pdb", BioStructures.PDB)
ERROR: Two copies of the same atom have the same alternative location ID. Existin…
lmiq updated
4 months ago
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Sorting by `projectDescription` fails to properly sort all results.
```
$ http 'https://service.azul.data.humancellatlas.org/index/projects?size=30&catalog=dcp37&order=asc&sort=projectDescription&…
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This issue is related to the recent efforts of including and better representing excited species (#171, #172).
We have data for reactions of excited OH* from the FFCM1 project (including thermo for O…
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what is EssoilDB?
why is it important?
what is in it (as much detail compatible with clarity - this is hard!)?
how can I use it? (also hard)
how can I get more information?
(and add more ideas he…
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```
e.g. has_integral_part , transformation_of
have no instance level equivalents.
Seems that class/class relations are more macro like than instance level. They
all expand into quite
different s…
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> the quadratic complexity of the self-attention module restricts Graphormer’s application on large graphs.
The paper describes graphormer as not applicable to large graphs. What is the maximum num…
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**Describe the bug**
A clear and concise description of what the bug is.
**To Reproduce**
Steps to reproduce the behaviour:
1. happens with input (include input files)
POSCAR file
```
Gener…
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I've been pushing to include more relations into the Relation Ontology that correspond to various post-translational modifications (e.g., phosphorylates, ubiquitinates, myrisotlyates).
I began cura…