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# existing sparql queries
_(it would be useful to have these mapped to scigraph rest endpoint)_
Note: these were produced via `$nosetests tests.unit.test_views:TestFrontend.testGenotypePhenotypeSea…
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Currently failing on CI http://ci.monarchinitiative.org/job/build-bgee-ttl/7/console
looks like this may have changed
```
files = {
'anat_entity': {
'path': 'current/d…
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https://monarchinitiative.org/gene/FlyBase:FBgn0014445
FlyBase assigns this to be a Scer (yeast) gene, which is of course correct
But this means that we end up with 6 "yeast genes" with nervous syst…
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(Not sure if this is the place to raise it, and it may well already be known and under control)
Per the subject, the SSL certificate will be expiring soon.
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Add
Ontology hpo
as first argument to ItalianPromptGenerator, and adapt rest of code to it. As of now compiling gives
[INFO] -------------------------------------------------------------
[ERRO…
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I'm trying to install a local copy of squirls on my Ubuntu 22.04 machine. I don't know of a Squirls forum where I could post the error hence the decision to post it here. Please look at my CL output d…
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We have no yeast gene orthology info, e.g
https://api.monarchinitiative.org/api/bioentity/gene/SGD%3AS000003865/homologs/?rows=20&fetch_objects=true
It is in the panther species list:
https://g…
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The latest build of monarch.owl in scigraph contains 805 subClassOf cycles,
https://scigraph-ontology-dev.monarchinitiative.org/scigraph/cypher/execute.json?cypherQuery=MATCH+(n)-[%3AsubClassOf*1..…
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How do we handle "phenotype manifest in" data?
- Link them to the anatomical entity via 'located in' or 'expressed in' and/or;
- Link them to UPheno classes with 'has phenotype', eg https://monarchi…
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Related to duplicated gene-disease issue #735.
Recreate: From phenotype http://beta.monarchinitiative.org/phenotype/ZP:0007522, go to Genes tab. Count is 4, but all four are the same gene/associatio…