monarch-initiative biolink-api issues

monarch-initiative / biolink-api

API for linked biological knowledge

https://api.monarchinitiative.org/api/

BSD 3-Clause "New" or "Revised" License

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issues

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feature request: resolve list of ontology terms

#396 bheavner opened 1 year ago
0
SSL certificate for https://api.monarchinitiative.org/ set to expire on June 3rd (15 days)

#395 TheMadBug opened 2 years ago
1
Fixed typo in Scigraph API call

#394 gaurav closed 2 years ago
0
error when retrieving data for a specific id

#393 dominickdm opened 2 years ago
1
Taxon Label to ID Mapper Endpoint

#392 falquaddoomi closed 2 years ago
9
Add general api endpoint for mapping taxon labels to ids?

#391 vincerubinetti opened 2 years ago
6
Text annotator data needs significant cleaning

#390 vincerubinetti opened 2 years ago
2
`/sim/compare` `GET` results different from `POST` results

#389 vincerubinetti closed 2 years ago
7
Renames 'category' to 'categories' in datamodel.serializers

#388 falquaddoomi closed 2 years ago
0
"category" field in /nlp/annotate/entities is always empty

#387 falquaddoomi opened 2 years ago
2
Include taxon id with taxon label in facet count of entity search endpoint

#386 vincerubinetti opened 2 years ago
5
SciGraph returning incorrect text/indices on Monarch API

#385 gaurav opened 2 years ago
0
Question about the phenotyping sufficiency score

#384 sophie22 closed 2 years ago
2
Run tests on dockerized application prior to pushing to dockerhub

#383 kshefchek opened 2 years ago
0
adds a series of MME endpoints for matching patients to diseases and non-human genes

#382 kshefchek closed 2 years ago
1
Move scigraph util to ontobio; better handling of ontobio objects; set owlsim limits

#381 kshefchek closed 2 years ago
4
Adjustments to owlsim service to prevent server overload

#380 kshefchek closed 2 years ago
1
504 errors for /sim/search when limit varies

#379 cemordaunt closed 2 years ago
3
Allow biolink to boot up without a running instance of owlsim

#378 kshefchek opened 2 years ago
1
Added ProxyFix wrapper to detect protocol from proxy

#377 falquaddoomi closed 2 years ago
0
Evidence graph is broken for publication - x associations

#376 kshefchek opened 2 years ago
0
Add disease chemical data from CTD

#375 kshefchek opened 2 years ago
0
/sim/search - limit question

#374 dominickdm closed 3 years ago
1
add support for filtering based on equivalent curie prefixes, leaf nodes

#373 kshefchek closed 3 years ago
0
Add autocomplete function to help POET

#372 monicacecilia closed 2 years ago
2
Consider more proactive sanitizing of inputs and output in API

#371 kltm opened 3 years ago
0
api/sim/search: 504 Gateway Time-out

#370 dominickdm closed 3 years ago
3
bioentity/{id} should include the alternative ids for both primary and deprecated ids

#369 kshefchek opened 3 years ago
0
Allow search to filter diseases only in OMIM

#368 kshefchek closed 3 years ago
6
fix dupe count issue for gene interactions

#367 kshefchek closed 3 years ago
0
search api includes solr tokenizer fields unlikely useful for users

#366 kshefchek opened 3 years ago
0
biolink-api /bioentity/function/ route does not seem to implement taxon filters

#365 kltm opened 3 years ago
11
Add ability to filter variants by clinvar confidence score for disease variant associations

#364 kshefchek opened 3 years ago
0
Add endpoint for variant pivot table on relation (patho, likely patho) and gene given a disease ID

#363 kshefchek opened 3 years ago
0
add q param to bioentity queries

#362 kshefchek closed 3 years ago
0
adding sort param for bioentity endpoints

#361 iimpulse closed 3 years ago
0
licensing vs usage of api.monarchinitiative.org/api

#360 olszewskip closed 3 years ago
6
Add scigraph clique and candidate clique endpoints to biolink (dupe see #55)

#359 kshefchek closed 3 years ago
2
gene_to_uniprot_from_mygene (mapping of HGNC issue)

#358 lpalbou opened 3 years ago
1
use scigraph ontology for nlp

#357 kshefchek closed 4 years ago
0
Move data manipulation in monarch-ui to ontobio/biolink-api

#356 kshefchek opened 4 years ago
1
Switch scigraph annotate backend to scigraph-ontology

#355 kshefchek closed 4 years ago
1
Add news endpoint that returns monarch blog rss feed

#354 kshefchek opened 4 years ago
0
Add synonym types to bioentity {id} endpoints

#353 kshefchek opened 4 years ago
0
add dockerfile, owlsim2 singleton object

#352 kshefchek closed 4 years ago
0
Add fq to autocomplete endpoint

#351 kshefchek closed 4 years ago
0
Version API and add to pypi

#350 kshefchek closed 4 years ago
1
remove deprecated werkzeug.cached_property

#349 kshefchek opened 4 years ago
1
Add tsv serializer to /sim/search and /sim/compare

#348 kshefchek opened 4 years ago
0
Add ability to filter on leaf nodes in autocomplete

#347 kshefchek closed 4 years ago
2