monarch-initiative biolink-api issues

monarch-initiative / biolink-api

API for linked biological knowledge

https://api.monarchinitiative.org/api/

BSD 3-Clause "New" or "Revised" License

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issues

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Add equivalent ids in bioentity/{id} endpoint

#346 kshefchek opened 4 years ago
0
Update phenotype closure bins with new Upheno classes

#345 kshefchek opened 4 years ago
1
Amend metadata datasets route

#344 deepakunni3 closed 4 years ago
3
Getting 504 for function endpoint in gene

#343 Prakash2403 closed 4 years ago
0
Ensure that all datasets are returned by metadata/datasets route

#342 deepakunni3 closed 4 years ago
1
Support for querying for direct vs inferred associations, other fixes for ui

#341 kshefchek closed 4 years ago
0
Move monarch-mme code to ontobio/biolink-api

#340 kshefchek opened 4 years ago
0
Subject_label null for mart queries

#339 kshefchek opened 5 years ago
0
nginx errors after upgrading to gunicon 20.0.0

#338 kshefchek opened 5 years ago
0
Optional parameter to disable inferring of taxon when fetching associations

#337 deepakunni3 closed 4 years ago
1
Cache gene sets and allow for set operations

#336 kshefchek opened 5 years ago
0
Switch from 'categories' field to 'category' in model and serializers

#335 deepakunni3 closed 5 years ago
5
Fix missing taxon filter for gene/<id>/variants route

#334 deepakunni3 closed 5 years ago
0
Have biolink pull gene desriptions and pubmed info from mygene and eutils

#333 kshefchek opened 5 years ago
0
Slimmer route: add exclude_slim parameter

#332 lpalbou opened 5 years ago
1
Ribbon route without annotations

#331 lpalbou closed 5 years ago
0
Add association type endpoint

#330 kshefchek closed 5 years ago
3
Merge the implementations of some GO & Monarch BioLink routes

#329 lpalbou opened 5 years ago
0
Query with content-type : application/json returns 400 status code

#328 lpalbou opened 5 years ago
1
Improve allele autocomplete

#327 cmungall opened 5 years ago
0
Ensure that taxon parameter accepts multi-valued list

#326 deepakunni3 closed 5 years ago
0
Add category to autocomplete query

#325 cmungall closed 5 years ago
2
Fix bug where clique leader was not reachable when trying to convert a gene to its UniProtKB identifier

#324 deepakunni3 closed 5 years ago
0
fix behave tests; new search params

#323 kshefchek closed 5 years ago
1
Add a configurable service specific identifier converter

#322 deepakunni3 closed 5 years ago
2
Clique leader not reachable from outgoing edges from a node in SciGraph

#321 deepakunni3 closed 5 years ago
5
add has_part, inheres_in_part_of to phenotype anatomy

#320 kshefchek closed 5 years ago
0
end-user adventures in attempting to use API for the first time

#319 diekhans opened 5 years ago
0
Discrepancy in results due to a mixed variety of calls

#318 deepakunni3 opened 5 years ago
0
Add scigraph annotator routes

#317 deepakunni3 closed 5 years ago
8
Aspect field in assoc objects

#316 lpalbou opened 5 years ago
1
Add facet_fields parameter to all Bioentity routes

#315 deepakunni3 closed 5 years ago
5
Update sim routes; add evidence table route

#314 kshefchek closed 5 years ago
0
Add facet.field for association functions

#313 kshefchek closed 5 years ago
1
Slimmer function route: duplicated results ?

#312 lpalbou opened 5 years ago
0
Ensure that xrefs are included as part of NamedObject in scigraph_util

#311 deepakunni3 closed 5 years ago
0
Fetch raw association counts instead of distinct

#310 deepakunni3 closed 5 years ago
2
Add details about biolink-api in demo page

#309 monicacecilia opened 5 years ago
1
Minor improvements for term pages on monarch-ui

#308 monicacecilia closed 4 years ago
5
biolink json response: beautifier nearly double payload size

#307 lpalbou closed 5 years ago
1
/bioentity/x/publications : duplicated ids

#306 lpalbou opened 5 years ago
1
Fix bug where get_association_counts was failing for certain diseases

#305 deepakunni3 closed 5 years ago
1
WIP: fixing evidence/graph/{id}/image

#304 kshefchek closed 5 years ago
0
Return an evidence graph given two ids and association type

#303 kshefchek closed 5 years ago
1
Add as_dict method to bbopgraph for serializing to json

#302 kshefchek closed 5 years ago
2
Add filter for causal and non-causal gene to disease associations

#301 kshefchek closed 5 years ago
0
Revert "Fixes for Monarch UI"

#300 deepakunni3 closed 5 years ago
0
Fixes for Monarch UI

#299 deepakunni3 closed 5 years ago
0
Add meta field to evidence graph edge list

#298 kshefchek closed 5 years ago
1
Enable biolink enrichment method to perform chemical enrichment based on ChEBI ontology

#297 realmarcin opened 5 years ago
0

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