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monarch-initiative
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biolink-api
API for linked biological knowledge
https://api.monarchinitiative.org/api/
BSD 3-Clause "New" or "Revised" License
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add freq and onset to PhenotypeDiseaseAssociations
#296
kshefchek
closed
5 years ago
0
Evidence types null when association has evidence codes
#295
kshefchek
closed
4 years ago
0
ClientAPIs link broken in Readme.md
#294
realmarcin
closed
4 years ago
1
Fix behave tests
#293
deepakunni3
closed
5 years ago
1
Routes for fetching ontology terms should provide aspect/category
#292
deepakunni3
opened
5 years ago
0
Fix bioentityset routes
#291
deepakunni3
closed
5 years ago
0
fix ortholog-disease and ortholog-phenotype endpoints
#290
kshefchek
closed
5 years ago
1
Fix homologs route
#289
deepakunni3
closed
5 years ago
1
Add onset and frequency to disease phenotype associations
#288
kshefchek
closed
5 years ago
0
500 for homologs endpoint
#287
kshefchek
closed
5 years ago
2
Get metadata for datasets
#286
deepakunni3
closed
5 years ago
3
search should allow for filtering and faceting via taxon label
#285
nathandunn
opened
5 years ago
1
Need for Biolink predicates to describe data-driven similarity, and in general metadata/provenance for similarity
#284
realmarcin
opened
5 years ago
0
Add missing routes
#283
deepakunni3
closed
5 years ago
3
autocomplete returns a funny GO idea
#282
nathandunn
opened
5 years ago
1
Fix graph routes
#281
deepakunni3
closed
5 years ago
2
Improve performance when fetching associations; updated counts and json schema
#280
deepakunni3
closed
5 years ago
1
Taxon counts for different entities
#279
deepakunni3
opened
5 years ago
0
Add all monarch association types as biolink routes
#278
kshefchek
closed
5 years ago
5
/sim/search and compare, add option for ID types
#277
kshefchek
opened
5 years ago
0
Simplify associations and facet counts with association_type field
#276
kshefchek
closed
4 years ago
0
Add frequency and age of onset to disease-phenotype
#275
kshefchek
closed
5 years ago
1
gene-disease associations, add param to filter on causal, non-causal, both
#274
kshefchek
closed
5 years ago
0
Improve /api/graph/edges/from/ endpoint
#273
kshefchek
closed
5 years ago
1
Gunicorn cryptically fails when a remote resource fails to load at startup
#272
kshefchek
opened
5 years ago
0
Add iri and category for subject and object in association results
#271
deepakunni3
closed
5 years ago
0
Add filters to routes
#270
deepakunni3
closed
5 years ago
0
Consolidate ontol and ontology namespace
#269
deepakunni3
opened
5 years ago
0
/graph/edges/from/<id> oddity
#268
deepakunni3
closed
5 years ago
1
Add taxon and relation filter to all routes that fetch associations
#267
deepakunni3
closed
5 years ago
0
/bioentity/function/<id> conflict with /bioentity/<type>/<id>
#266
deepakunni3
opened
5 years ago
1
Supporting pagination
#265
deepakunni3
closed
5 years ago
1
Return subject category and object category for associations
#264
deepakunni3
opened
5 years ago
0
Return IRIs for subject and object
#263
deepakunni3
closed
5 years ago
0
Update config.yaml
#262
lpalbou
closed
5 years ago
0
A handful of fixes
#261
deepakunni3
closed
5 years ago
0
OSError: Exec format error with Werkzeug 0.15
#260
kshefchek
closed
5 years ago
2
Use SciGraph URL from config.yaml instead of default
#259
deepakunni3
closed
5 years ago
1
ClinVarVariant:549356 returns 404
#258
kshefchek
closed
5 years ago
4
Make use of MyGene client for gene to uniprot conversion and vice-versa
#257
deepakunni3
closed
5 years ago
0
Improve error handling
#256
deepakunni3
closed
5 years ago
2
Bump ontobio to 1.7.2
#255
kshefchek
closed
5 years ago
0
Fixes a few bugs with /bioentity/<type>/<id> route and get_association_counts
#254
deepakunni3
closed
5 years ago
1
Add option for depth to SciGraph calls
#253
deepakunni3
closed
5 years ago
1
Add routes.yaml
#252
deepakunni3
closed
5 years ago
1
Dev server takes minute and a half to boot up
#251
kshefchek
closed
5 years ago
7
fix association counts, clinical modifiers, and inheritance
#250
kshefchek
closed
5 years ago
2
What exactly does "Inverse" imply ?
#249
YaphetKG
opened
5 years ago
0
Provide association subject and object type in response
#248
deepakunni3
opened
5 years ago
0
Add missing routes for pathway, genotype, variant and literature types
#247
deepakunni3
closed
5 years ago
10
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