issues
search
monarch-initiative
/
biolink-api
API for linked biological knowledge
https://api.monarchinitiative.org/api/
BSD 3-Clause "New" or "Revised" License
63
stars
25
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Add more routes for fetching ortholog-x data
#246
deepakunni3
opened
5 years ago
0
Add metadata field for sim result
#245
kshefchek
closed
5 years ago
0
use uPheno classes for closure bins
#244
kshefchek
closed
5 years ago
0
Add search, compare, score endpoints to biolink
#243
kshefchek
closed
5 years ago
0
Add a POST method for /ontol/subgraph/ route
#242
deepakunni3
closed
5 years ago
1
Add inheritance and onset to bioentity/{type}/{id}
#241
kshefchek
closed
5 years ago
3
Improve /bioentityset/homologs/
#240
deepakunni3
closed
3 years ago
3
Preload ontologies
#239
deepakunni3
closed
5 years ago
3
Slimmer function: new field
#238
lpalbou
opened
5 years ago
3
Configuration of endpoints as driven by config.yaml
#237
deepakunni3
closed
5 years ago
3
Configuration of endpoints in BioLink (closed)
#236
deepakunni3
closed
5 years ago
3
Allow configuration of endpoints in a biolink installation
#235
cmungall
closed
5 years ago
1
Proposal for rows
#234
lpalbou
closed
4 years ago
2
Slimmer function: some annotations not fetched
#233
lpalbou
closed
5 years ago
1
Complete /bioentityset/homologs/
#232
putmantime
opened
5 years ago
0
Add the ability to get association counts for generic routes
#231
deepakunni3
closed
5 years ago
8
Fix for consistent behavior for URLs with a trailing slash
#230
deepakunni3
closed
5 years ago
0
Routes with a trailing slash yields a 404
#229
deepakunni3
closed
5 years ago
0
Internal API request - Annotation Review Model Search
#228
tmushayahama
opened
5 years ago
0
Use SciGraph URL from config.yaml
#227
deepakunni3
closed
5 years ago
0
HGNC ids not being looked up properly
#226
nathandunn
closed
5 years ago
8
Added GO queries (/ontology/ and /bioentity/function/) [merge OntoBio first]
#225
lpalbou
closed
5 years ago
0
/disease/{id}/phenotypes and phenotype/{id}/diseases not symmetric?
#224
cbizon
opened
5 years ago
2
wire nlp/annotate to scigraph service
#223
nathandunn
closed
4 years ago
8
/ontol/ -> /ontology/
#222
lpalbou
opened
5 years ago
0
Split slimmer route into three separate routes
#221
deepakunni3
closed
5 years ago
0
Include more upstream information in logging to aid while analyzing logs
#220
deepakunni3
opened
5 years ago
1
Add support for anatomy category to bioentityset/slimmer route
#219
deepakunni3
closed
5 years ago
0
Check for facet_counts before creating closure bins
#218
deepakunni3
closed
5 years ago
0
graph/edges/from and graph/node/id are similar in implementation
#217
deepakunni3
opened
5 years ago
0
Improvements to EntitySetSlimmer
#216
deepakunni3
closed
5 years ago
23
Fix usage of neighbors method in scigraph_util
#215
deepakunni3
closed
5 years ago
0
Fix example IDs for routes
#214
deepakunni3
closed
5 years ago
0
Tidy up association routes and add new mart routes
#213
deepakunni3
closed
5 years ago
0
Mappings in gene/{id}/function
#212
cbizon
opened
5 years ago
0
Add relationship param to association queries
#211
cmungall
closed
5 years ago
0
Additional routes required for homolog calls
#210
cmungall
opened
5 years ago
0
ribbon / slimmer function: "evidence_with" should include - label, id, and taxon - for each entry
#209
nathandunn
opened
5 years ago
4
ribbon / slimmer function: add gene symbol for display in with column
#208
nathandunn
closed
5 years ago
5
ribbon / slimmer: gene lookup for UniProtKB IDs should grab human genes
#207
nathandunn
closed
5 years ago
4
Need functions for determining term-to-term relatedness
#206
selewis
opened
5 years ago
10
Expose relationship_type argument in slimmer call
#205
deepakunni3
closed
5 years ago
0
Wrong JSON-LD Context ?
#204
lpalbou
opened
6 years ago
4
The "graph" path does not currently seem to function
#203
kltm
closed
5 years ago
0
Add mart route for fetching all entities of a given type for a species
#202
cmungall
opened
6 years ago
0
bioentityset/slimmer/function should provide a relationship_type argument to determine which closure to use
#201
deepakunni3
closed
5 years ago
5
Add a parameter to /prefixes/ routes to include additional json-ld contexts
#200
cmungall
opened
6 years ago
1
Search for parent directories when looking for .git
#199
deepakunni3
closed
6 years ago
0
Consistency in the API design
#198
tmushayahama
opened
6 years ago
0
Fix bug where parameters of one route was showing up in another route
#197
deepakunni3
closed
6 years ago
0
Previous
Next