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monarch-initiative
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biolink-api
API for linked biological knowledge
https://api.monarchinitiative.org/api/
BSD 3-Clause "New" or "Revised" License
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Send user agent when calling Ontobio and other services
#196
deepakunni3
closed
6 years ago
1
support "expression" category for slimmer function
#195
nathandunn
opened
6 years ago
5
biolink api doesn't provide an anchor link anymore
#194
nathandunn
closed
6 years ago
4
Possible concept leak between Monarch and GO Solr concepts (query for fields that don't exist)
#193
kltm
opened
6 years ago
1
Fix calls where results were not being returned properly
#192
deepakunni3
closed
6 years ago
0
Generic /association/find route returning 500
#191
cmungall
opened
6 years ago
10
disease/<id>/variants returns no results
#190
deepakunni3
closed
6 years ago
0
perform gene to protein lookup only when category is 'function'
#189
deepakunni3
closed
6 years ago
0
Use inputs.boolean instead of bool for boolean arguments to allow for proper parsing
#188
deepakunni3
closed
6 years ago
1
Empty pheno results from biolink
#187
selewis
closed
6 years ago
0
disease/phenotypes route failing
#186
cmungall
closed
6 years ago
3
Pathway calls are returning 500
#185
putmantime
closed
6 years ago
2
Discrepancies in results for HP and GO (same slim query)
#184
selewis
opened
6 years ago
1
Add extract ontology subset operation
#183
cmungall
opened
6 years ago
0
register with smartAPI
#182
cmungall
opened
6 years ago
1
slimmer should return species evidence from IBA evidence
#181
nathandunn
opened
6 years ago
7
500 for unrecognized gene in gene/{id}/function
#180
cbizon
opened
6 years ago
0
/subgraph/<ontology>/<node> call gives error (due to url length?)
#179
realmarcin
closed
5 years ago
2
Case sensitive /bioentity/{id} search
#178
lhannest
opened
6 years ago
0
Add disease to GO linkages
#177
cmungall
opened
6 years ago
0
Add /function/{id}/gene
#176
kshefchek
closed
6 years ago
3
Support a list of prefixes to filter
#175
kshefchek
closed
6 years ago
0
build from ontobio master on beta/dev
#174
kshefchek
closed
6 years ago
0
Extend /subgraph/<ontology>/<node> call to optionally include ancestors and descendants in the subgraph
#173
deepakunni3
closed
6 years ago
0
create API method to return propagated parents terms for a given term
#172
realmarcin
closed
6 years ago
1
/gene/{id}/function relationship identifiers
#171
cbizon
opened
6 years ago
0
Add new calls to the API
#170
deepakunni3
closed
6 years ago
2
Consistent querying of SciGraph for /<type>/<id> queries
#169
deepakunni3
closed
6 years ago
0
Should /$type/<id> return basic node info, or all associations
#168
cmungall
opened
6 years ago
5
add exclude_automatic_assertions parameter to bioentityset/slimmer/
#167
deepakunni3
closed
6 years ago
2
provide an argument to include IEA assertions for the slimmer/function
#166
nathandunn
closed
6 years ago
0
allow to query by relationship type and return relationship type
#165
realmarcin
opened
6 years ago
2
GET /search/entity/{term} fails
#164
lhannest
opened
6 years ago
3
no output and errors arose from biolink::association/{from,then} endpoint calls, and equivalent ids problems.
#163
NuriaQueralt
closed
6 years ago
1
Add endpoints that allow range queries to get genes and variants from Monarch
#162
deepakunni3
opened
6 years ago
1
create an endpoint for getting gene to variant associations
#161
deepakunni3
closed
6 years ago
5
Only results for genes and diseases?
#160
lhannest
opened
6 years ago
1
phenotypes should be phenotype
#159
kshefchek
closed
6 years ago
0
bioentityset/slimmer/function missing `reference` for GO annotations
#158
nathandunn
closed
6 years ago
1
create route for Genome Features / Variants that aligns with current Apollo track / variant services
#157
nathandunn
opened
6 years ago
6
Align association routes with biolink-model
#156
cmungall
opened
6 years ago
1
numFound returns null
#155
putmantime
closed
6 years ago
1
create a variant for genes route
#154
nathandunn
closed
6 years ago
1
Gene->Pathway->Gene error?
#153
cbizon
closed
6 years ago
2
Add an endpoint to get disease definition or edit /bioentity/disease/{id} to include disease definition
#152
deepakunni3
closed
6 years ago
0
bringing in updated ontobio
#151
nathandunn
closed
6 years ago
1
Add a landing page for biolink-api
#150
deepakunni3
closed
6 years ago
0
where did the monarch biolink api go?
#149
mellybelly
closed
6 years ago
4
add autocomplete and search endpoints for monarch
#148
kshefchek
closed
6 years ago
1
provide relationship_type as enum in swagger UI
#147
deepakunni3
closed
6 years ago
0
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