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Hi all
First of congrats on your wonderful software, just read about it and it looks very promising.
I have a question/request.
I have two datasets (coming from the same samples (same fastq fi…
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Hi,
Thank you for this very useful package. As many of the CCLE lines have now been screened in Achilles experiments, I'm wondering whether any thought has been given to harmonizing and serving th…
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`%%time
adata=ov.pp.qc(adata,
tresh={'mito_perc': 0.2, 'nUMIs': 500, 'detected_genes': 250},
doublets_method='sccomposite',
batch_key=None)`
TypeError…
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I noticed in the UI (arax.ncats.io/beta) that when there are multiple `source_record_urls` (which is a list data type) on an edge source, the UI displays and hyperlinks them as one link - see red hype…
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1. To identify feature overlap between the [2020 + 2021] dataset and the 2022 dataset (D1)
2. To identify feature overlap between the 2021 dataset and 2022 dataset (D2)
3. Perform dataset harmonizat…
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I want to use logging in my script that runs caiman, but I do not want the excessive logging output from `CNMF.fit()`. According to:
```
print(f"Name: {__name__}")
logger = logging.getLogger(__n…
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- [ ] Fix those tests that are failing in PR https://github.com/TeselaGen/api-client/pull/43
- [ ] Implement `plates` functionalities on BUILD
Some methods fail because they are related to specifi…
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### BPCells doesn't wok with chromatin assay
I am working with a big multiomics object. I updated Seurat to Version 5, because I need the support of BPcells to avoid breaking R because of the size of…
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Thanks for your great work! But when I run the code on the RNA modality, there seems a bug as the following:
![image](https://github.com/CHPGenetics/COMPOSITE/assets/143673887/cdc29e08-9eef-420f-9a00…