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Hello, my original file is a two-photon microscope tiff file with four channels of shape (26,574,574) ZXY, imaged by different fluorescent signals. I convert my image first to 26 frames (574,574) 2D i…
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`ModuleNotFoundError: No module named 'skimage'`
I think that must be part of `pip install bia-bob`
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`denoising datasets: ['N2V_BSD68', 'N2V_SEM', 'N2V_RGB', 'Flywing', 'Convallaria']
`
`files = portfolio.denoising.Flywing.download(root_path)
`
`AttributeError: 'Denoising' object has no attribu…
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I am running n2v on a graph with around 40 million edges with the default values from the example in the readme. The Computing transition probabilities step is estimated to take around 533 hours and i…
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Hi
I trained the model with a 2D array with 1 channel with shape (1600, 256,256,1) after generating patches.
when I want to predict the trained model with another image with a shape of (256,256) I…
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Hi,
I just installed your denoiseg package in a fresh conda environment, but upon running the example notebook [Mouse_Organoid_Cells_CBG_Example.ipynb](https://github.com/juglab/DenoiSeg/blob/main/…
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I am writing an enhancement such that you don't need to pass the whole training data to N2VConfig but rather the properties which are necessary such as the number of samples, number of channels, mean …
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**What is the task**
Create a test suite for the source code.
**Describe how the task contributes to the project**
So far a couple bugs have been found throughout the project that have thrown res…
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While working on a new uploader, getting stuck at the validation step on a model I downloaded from the zoo a few days ago:
Error:
```
Plugin BIO-RDF-Validator_88xme1698061811072:
Validation …
jmetz updated
11 months ago