-
Hello.
As far as I can understand - the main reason for using your own [netmhccons_1_1_python_interface.py](netmhccons_1_1_python_interface.py) are these lines:
```
#process_status_code = p.wai…
-
The install script doesn`t set correctly the permission for excuting netMHCpan.
PermissionError: [Errno 13] Permission denied: 'netMHCpan'
(base) mathieu@protub1-iric:~$ ls -Fla /usr/local/bin/n…
-
We should check if an interface to the selected prediction method is available in FRED2. FRED2 offers functionality to check for available interfaces:
```
>>> EpitopePredictorFactory.available_met…
-
**To Reproduce**
I'm running this in the `susannakiwala/pvactools:2.0.0-alpha.2` container with the command:
```
/opt/conda/bin/pvacseq run --iedb-install-directory /opt/iedb/ --allele-specific-bin…
-
```
p230198@peregrine:create_luts cat *.log
Rscript create_luts.R
Submitted batch job 13415020
Submitted batch job 13415021
Submitted batch job 13415023
#####################################…
-
Hello,
I just tried to install MhcVizPipe on Ubuntu 18.04 LTS. I noticed a bunch of errors related to sed:
sed: -e expression #1, char 22: unknown option to `s'
Here is my full install log.…
-
Hello
I have a set of vcf files (SNVs) from patients who have responded to chemotherapy versus a set of patients who have not responded.
I want to quantify the neoantigen load in the tumors ,can…
-
-
Chrome complains about this on page load.
Uncaught TypeError: Bootstrap's JavaScript requires jQuery. jQuery must be included before Bootstrap's JavaScript.
at Object.jQueryDetection (bootstra…
-
Hi @BenPorebski,
I am looking for free and open source (FOS) MHC-II epitope predictor, such as EpiJen, NetMHCII, NetMHCIIpan, TEPITOPE, TEPITOPEpan, PROPRED, RANKPEP, SVRMHC.Because of the short RE…