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**Describe the bug**
The `ome_tiff_remote.Rmd` vignette fails to load its OME-TIFF and the loading indicator in the Spatial view just keeps spinning.
**To Reproduce**
Steps to reproduce the beh…
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Hi all,
I cannot thank you enough (again) for this software and letting us experiment with it. It is very resourceful and I see in it quite some potential.
My issue is: I am trying to align an i…
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Hi team,
Thanks a lot for the amazing tool. I installed the minerva story and tried to open an image. I got this error: Invalid tiff file.
The file is a ome.tiff file. I wonder if there is any …
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Previously, we were able to use a bash script and run Ashlar on Linux using:
ashlar "${c[@]}" --pyramid --flip-y --maximum-shift $MAX_SHIFT --filter-sigma $SIGMA --align-channel $ALIGN_CHANNEL -o $…
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Note: This was discussed but not well-specified in the PRD for npe2 support.
Currently, the file extension filter displays the file pattern that plugins support instead of the intended behavior of …
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Hi Artur,
Great work with this package! I was trying it today (Dev branch) for some of my Xenium data and noticed that I get a Java heap space issue.
I solved it using ```options(java.parameters…
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I am trying to run minerva-author on a H&E dataset of file type .scn . Since, minerva supports OME-TIFF/SVS formats, I opened the .scn file in QuPath (https://qupath.github.io/) and exported it out as…
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Note: The problem described below is only occurring if the ``petr-test`` folder is nested into another .zarr folder, such as
``/uod/idr-scratch/test.zarr/petr-test/multifile-Z1.ome.zarr``. If this …
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With the new [N5 plugin](https://github.com/saalfeldlab/n5-ij) for FIJI, we should provide a third saving option (single page tiffs, tiff stacks, and N5).
The problem is that fast acquisitions only…
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Consider the attached ND dataset: [test.zip](https://github.com/ome/bioformats/files/12280486/test.zip)
If we delete the nd file (to force bioformats to consider each file individually) and use showi…