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Hey,
I am having some problems when reading an exporteSummarised result. When the file is exported all the settings go the bottom, but when reading with read_csv, I get the following parsing warnin…
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### Goal : Trying to connect OHDSI Atlas with OMOP CDM in Databricks with Tomcat.
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Caused by: org.flywaydb.core.internal.dbsupport.FlywaySqlException:
Unable to obtain Jdbc connection from Da…
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We (Hospital de Denia) have executed the feasability step and the process ended with no errors, but the csv files obtained as result had no content.
The only check we came up with was to filter conte…
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Need a user account and role in Snowflake. The role should possess privileges to access and read all schemas and tables within the specified account. Additionally, it should be capable of creating fil…
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When running the R2RML-F engine, I got the error r2rml.engine.R2RMLException: ERROR: relation "mimicredux.cost" does not exist. Probably this has to do with missing data in the OMOP-CDM database (issu…
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Hi everyone,
was anybody able to run the IncidencePrevalence package successfully on a Snowflake OMOP environment and could give advise please?
We are in the following situation:
- CodeToRun: Con…
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**Problem background:** I recently discovered that not all SQL flavors adhere to having case insensitive column names in their tables. Although according to the OMOP CDM documentation for v5.4, it wou…
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A sizeable minority of patients have observation end dates that mean they will not be included in almost any of our studies. Excluding these patients from the omop version would mean a smaller databas…
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I am trying to run the feasibility code but got the error message saying lots of columns are not found in cdm table cdm_source. I checked my connection is working and those columns are in the CDM_SOUR…
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I saw a strange thing yesterday. It looked like a CDM had named the `offset` column in the `note_nlp` table `"offset"`. I'm not sure if what I saw was what I thought I saw because I didn't realize you…